PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6141_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GRAS

Protein Properties

Length: 705aa MW: 80268.2 Da PI: 6.1229

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6141_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	346.2	5.4e-106	326	702	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaN 99 ++lL+ cA+ +ssgd+ +a++lL+++++++sp gd+ qRla +ft+AL+arl++s+ + ++ + ++++++ ++ l+ +k+f +sP++++ ++ N RrC6141_p1 326 RTLLTLCAQSISSGDKLAADELLKQIKKQCSPLGDASQRLAYFFTKALEARLQGSSGVMIQSYyDSITSKKRTAAQILKTYKAFLSASPFMTLIYFFSN 424 6799************************************************55555555427777777779********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 ++Il+a + ++ +HiiDf+i +G+QWp ++q +++ + gp +lRiT+v+ p++g +e++e tg+rL+++++++gvpfe+n++++k++e+++lee+++ RrC6141_p1 425 KMILDASKDASVLHIIDFGILYGFQWPMFIQYISKSKTGPRKLRITAVELPQNGfrPTEKIEDTGRRLREYCKRFGVPFEYNAIASKNWETIRLEEFKI 523 *************************************************9**************************99********* PP GRAS 197 kpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 +p+E+laVn+vl+ ++l d + e+ +rd +Lkl+++++P+v+ + + + n++ F++rf eal +ys+lfd++ ++l++e+ er+ E e++gre+ RrC6141_p1 524 RPNEVLAVNSVLRFKNLRDVTPGEEDcPRDGFLKLIRDMKPDVFLSSTINGSFNAPFFATRFKEALFHYSSLFDMFGSTLSKENPERMHFEGEFFGREV 622 **************9999999889******************************************************************* PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +nv+aceg +r+er et+++W+ r+ +aGFk+ p++ + +++ + ++k + + + ++++s+++++gWk+r L+s S+W RrC6141_p1 623 MNVIACEGVDRVERPETYKQWQVRMVRAGFKQKPVEAELVESFREKMKKWGyHKDFVLDQDSNWFLQGWKGRILFSSSCW 702 *********************************************999999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.463	299	682	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-103	326	702	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence Send to blast
MDSNLSRIVN GYEYYDVSFL PNQIPNLGFG VPSLSEFDLS TNHHHHNQPS IWVPATEQDQ 60 DLDHLHHHDQ YSPPASDEID SENTLLKYVN QLLMEEETLS ENQSMSSYDA LALRQTEEML 120 QQVINDSLAQ SPCITPPDSI TSSTTSSGSS GGGEYLNSNS NSCVRIETEA DSAVSFQGSN 180 KSRGSFGQPA NEILVRSIFS DADSVNQFKR GLEEASKFLP NTDQWIFNLE QEVLPVKDEK 240 GFSRVRKHHH HEPDEEARRR SKQSAANVDD GNITELFDKV LLLDNQLNPQ IKEEEETDVN 300 NVSSKSPANT KEGGRAKKKS KAVDFRTLLT LCAQSISSGD KLAADELLKQ IKKQCSPLGD 360 ASQRLAYFFT KALEARLQGS SGVMIQSYYD SITSKKRTAA QILKTYKAFL SASPFMTLIY 420 FFSNKMILDA SKDASVLHII DFGILYGFQW PMFIQYISKS KTGPRKLRIT AVELPQNGFR 480 PTEKIEDTGR RLREYCKRFG VPFEYNAIAS KNWETIRLEE FKIRPNEVLA VNSVLRFKNL 540 RDVTPGEEDC PRDGFLKLIR DMKPDVFLSS TINGSFNAPF FATRFKEALF HYSSLFDMFG 600 STLSKENPER MHFEGEFFGR EVMNVIACEG VDRVERPETY KQWQVRMVRA GFKQKPVEAE 660 LVESFREKMK KWGYHKDFVL DQDSNWFLQG WKGRILFSSS CWVPS

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence Send to blast

MDSNLSRIVN GYEYYDVSFL PNQIPNLGFG VPSLSEFDLS TNHHHHNQPS IWVPATEQDQ  60
DLDHLHHHDQ YSPPASDEID SENTLLKYVN QLLMEEETLS ENQSMSSYDA LALRQTEEML  120
QQVINDSLAQ SPCITPPDSI TSSTTSSGSS GGGEYLNSNS NSCVRIETEA DSAVSFQGSN  180
KSRGSFGQPA NEILVRSIFS DADSVNQFKR GLEEASKFLP NTDQWIFNLE QEVLPVKDEK  240
GFSRVRKHHH HEPDEEARRR SKQSAANVDD GNITELFDKV LLLDNQLNPQ IKEEEETDVN  300
NVSSKSPANT KEGGRAKKKS KAVDFRTLLT LCAQSISSGD KLAADELLKQ IKKQCSPLGD  360
ASQRLAYFFT KALEARLQGS SGVMIQSYYD SITSKKRTAA QILKTYKAFL SASPFMTLIY  420
FFSNKMILDA SKDASVLHII DFGILYGFQW PMFIQYISKS KTGPRKLRIT AVELPQNGFR  480
PTEKIEDTGR RLREYCKRFG VPFEYNAIAS KNWETIRLEE FKIRPNEVLA VNSVLRFKNL  540
RDVTPGEEDC PRDGFLKLIR DMKPDVFLSS TINGSFNAPF FATRFKEALF HYSSLFDMFG  600
STLSKENPER MHFEGEFFGR EVMNVIACEG VDRVERPETY KQWQVRMVRA GFKQKPVEAE  660
LVESFREKMK KWGYHKDFVL DQDSNWFLQG WKGRILFSSS CWVPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-44	332	702	11	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018487014.1	0.0	PREDICTED: scarecrow-like protein 31
Swissprot	Q3EDH0	0.0	SCL31_ARATH; Scarecrow-like protein 31
TrEMBL	A0A078FA29	0.0	A0A078FA29_BRANA; BnaC08g45390D protein
STRING	Bo8g114030.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13511	17	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	0.0	GRAS family protein