PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6142_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 226aa    MW: 24106.2 Da    PI: 9.3982
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6142_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.8e-1889123135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C+ Cgt kTplWR gp g+k+LCnaCG++ rkk++
  RrC6142_p4  89 CVDCGTNKTPLWRGGPAGPKSLCNACGIKSRKKRQ 123
                 *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.03183119IPR000679Zinc finger, GATA-type
SMARTSM004014.4E-1183134IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-1284132No hitNo description
Gene3DG3DSA:3.30.50.101.9E-1487123IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.30E-1188122No hitNo description
PfamPF003203.4E-1689123IPR000679Zinc finger, GATA-type
PROSITE patternPS00344089114IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
SSPPSTLSLS HLSSSNTLSA SQEELSDSSL LFLLLVDTFS LSSKWINMSM TEESKTTKLE  60
SAGDSSDVEN GNCSSSGSGG GGGDTKKTCV DCGTNKTPLW RGGPAGPKSL CNACGIKSRK  120
KRQAALGIKQ EDSNKMKNNK SNDSCLAPDN QTVKNGKGDS GNVKNKIKTE TEDCNDKKSV  180
KRGSRFLDLG FKVPVMKRSV VEKKRVWMKL GEEERAAVLL MALSCG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483743.11e-109PREDICTED: GATA transcription factor 17-like
SwissprotQ9LIB51e-57GAT17_ARATH; GATA transcription factor 17
TrEMBLA0A0D3DEC23e-86A0A0D3DEC2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F9813e-86A0A3P6F981_BRAOL; Uncharacterized protein
STRINGBo7g104200.15e-87(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138161624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16141.13e-67GATA family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]