PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6144_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 302aa    MW: 34314.8 Da    PI: 7.5832
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6144_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.43e-1249105155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s ++GV++++++gr++A+++d  s+n  ++k+ + g ++ +e Aa+a++ a++k++g
  RrC6144_p1  49 SSHRGVTRHRWTGRYEAHLWDkNSWNEtQTKKGRQGAYDEEEAAARAYDLAALKYWG 105
                 579******************88889998888888********************98 PP
2AP2544e-17148199155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  RrC6144_p1 148 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAARAYDIAAIEYRG 199
                 89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.71650113IPR001471AP2/ERF domain
SMARTSM003801.5E-2050119IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1450115IPR016177DNA-binding domain
PfamPF008471.7E-850105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-1251114IPR001471AP2/ERF domain
PRINTSPR003672.2E-55162IPR001471AP2/ERF domain
CDDcd000187.92E-25148209No hitNo description
SuperFamilySSF541714.58E-18148209IPR016177DNA-binding domain
PfamPF008471.5E-12148199IPR001471AP2/ERF domain
PROSITE profilePS5103218.874149207IPR001471AP2/ERF domain
SMARTSM003803.4E-26149213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-18149208IPR001471AP2/ERF domain
PRINTSPR003672.2E-5189209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MAKLSQRNKK IIEDETIDNT AIASASSVVF KCKRKRKSPP QNAPPQRSSS HRGVTRHRWT  60
GRYEAHLWDK NSWNETQTKK GRQGAYDEEE AAARAYDLAA LKYWGRDTLL NFPLSTYEED  120
IKEMEGNSKE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY  180
ATQEEAARAY DIAAIEYRGL NAVTNFDVSR YLDLPASKKI NAAASPESPN DQTSSDDTKT  240
EEITEPSTPP EAIQSRRSFP DDIQTYFECQ DSSKLATEED VIFGGFNSFI SPGLCNDFDY  300
WS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527860.0AK352786.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-M17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457265.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700 isoform X1
SwissprotA0JPZ81e-134AP2L3_ARATH; AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A0D3D1W40.0A0A0D3D1W4_BRAOL; Uncharacterized protein
STRINGBo6g124080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-132AP2 family protein