PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC618_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 258aa    MW: 28932.6 Da    PI: 5.9461
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC618_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001784106123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C+k+F ++  L  H  +H
  RrC618_p4  84 FQCKACKKVFASHQALGGHRASH 106
                89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.81E-583106No hitNo description
PfamPF139122.3E-983108IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.01484111IPR007087Zinc finger, C2H2
SMARTSM003550.09884106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene3DG3DSA:1.10.601.104.7E-4117149No hitNo description
SuperFamilySSF576671.81E-5158185No hitNo description
PfamPF139121.0E-12162186IPR007087Zinc finger, C2H2
SMARTSM003550.65163185IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328163185IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MQNSSCIDLI MFSSQGQHDE GNMSRPPWKR DRSNHHLNLY PNEDEELANC LVLLSNSGNA  60
YNNNNRHGHG KSKTVKKQKT AHVFQCKACK KVFASHQALG GHRASHKKVK GCFASQDKEE  120
EEEEEEYKED DDEEEEEDDE EEEEEDKPTA AAHIIARKRS NAHECTVCHR VFSSGQALGG  180
HKRCHWLTPS TYLRMTPLHD SSAVRSQALD QPSLDLNLAC QEYSVDPTVM SVGRDGGGNN  240
HNATSSNSWL KLASGDWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12532PPWKRDRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601041.11e-161PREDICTED: zinc finger protein ZAT2-like
TrEMBLA0A0D3DZH41e-159A0A0D3DZH4_BRAOL; Uncharacterized protein
STRINGBo8g118200.11e-160(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138951318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.19e-24C2H2-like zinc finger protein