PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6257_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HD-ZIP

Protein Properties

Length: 278aa MW: 31161.1 Da PI: 8.7385

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6257_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.7e-19	134	188	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le+ F+++++++ +++ LAkklgLt rqV vWFqNrRa+ k RrC6257_p2 134 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTK 188 677889***********************************************98 PP
2	HD-ZIP_I/II	122.8	1.6e-39	134	223	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LE++F+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rLeke +eLr +l RrC6257_p2 134 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTDENRRLEKEAAELR-AL 223 69*************************************************************************************9.54 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	1.6E-25	2	99	IPR006712	HD-ZIP protein, N-terminal
SuperFamily	SSF46689	1.04E-18	119	191	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.135	130	190	IPR001356	Homeobox domain
SMART	SM00389	1.9E-17	132	194	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-16	134	188	IPR001356	Homeobox domain
CDD	cd00086	8.03E-16	134	191	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.1E-18	134	188	IPR009057	Homeodomain-like
PRINTS	PR00031	7.3E-6	161	170	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	165	188	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.3E-6	170	186	IPR000047	Helix-turn-helix motif
SMART	SM00340	1.2E-23	190	233	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	8.2E-8	190	224	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MMMGKEDLSL SLSLGFAQTH HPLKLNLKPT SSPISNLQMF PWNQTFVSSS DHQNQQSLRK 60 IDVNSLPSTV DLEEETRVSS PNSTISSTVI SGKRRSEREG TSGGAGDDLD ITLDRSSSRG 120 TSSEEEEYGG EACRKKLRLS KDQSAVLEDT FKEHNTLNPK QKLALAKKLG LTARQVEVWF 180 QNRRARTKLK QTEVDCEYLK RCVEKLTDEN RRLEKEAAEL RALKLSPRLY GQMSPPTTLL 240 TCPSCERVSG SSNHNQRSVS LSPWLQTSHG LTFDVMHP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	190	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013595686.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT1
Swissprot	P46600	0.0	HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBL	A0A0D3DEL4	0.0	A0A0D3DEL4_BRAOL; Uncharacterized protein
STRING	Bo7g105120.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1563	26	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17460.1	1e-158	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] Tan W, et al. Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought. PLoS Genet., 2018. 14(4): p. e1007336 [PMID:29659577]