PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6274_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 416aa MW: 46959.6 Da PI: 6.642

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6274_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.4	4.1e-10	131	172	3	44
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 ++k rr+++NReAAr+sR+RKka +++Lee +L++ ++ RrC6274_p1 131 DDKTKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQE 172 6899**************************987777766554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.1E-7	127	173	No hit	No description
SMART	SM00338	1.5E-5	129	189	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.507	131	173	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-6	132	171	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.86E-6	133	175	No hit	No description
PROSITE pattern	PS00036	0	136	151	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.4E-27	222	295	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
VLTKVSSSSS ICSLENAFQT GDSLFISRLR DELSMMMSSS SSTNTQAVPF RDMGMYEPFQ 60 QLSGWENTFN TITSNNNNNN NNQTSSTVHE VDAARTEADV NNKGNYTSLY NNNSTEAEPS 120 SNNDQDEVQI DDKTKRRLAQ NREAARKSRL RKKAHVQQLE ESRLKLSQLE QELVRARQQG 180 LCVRNPSDAT TYLGPAGTMN TGIAAFEMEY KHWLEEQRKR VGEIRTALGA HISDVELKML 240 VDVCLNHYAN LFRMKADAAK ADVFFLISGM WRTSTERFFQ WIGGFRPSEL LNVVMPYVEP 300 LTDQQLLEVR NLQQSSQQAE EALSQGLDKL QQGLVENVAV VESVNQGAQM ASAMENLQSL 360 EGFVNQADHL RKQSMQQMSK ILTTRQAARG LLALGEYFHR LRALSSLWAA RPRERS

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

VLTKVSSSSS ICSLENAFQT GDSLFISRLR DELSMMMSSS SSTNTQAVPF RDMGMYEPFQ  60
QLSGWENTFN TITSNNNNNN NNQTSSTVHE VDAARTEADV NNKGNYTSLY NNNSTEAEPS  120
SNNDQDEVQI DDKTKRRLAQ NREAARKSRL RKKAHVQQLE ESRLKLSQLE QELVRARQQG  180
LCVRNPSDAT TYLGPAGTMN TGIAAFEMEY KHWLEEQRKR VGEIRTALGA HISDVELKML  240
VDVCLNHYAN LFRMKADAAK ADVFFLISGM WRTSTERFFQ WIGGFRPSEL LNVVMPYVEP  300
LTDQQLLEVR NLQQSSQQAE EALSQGLDKL QQGLVENVAV VESVNQGAQM ASAMENLQSL  360
EGFVNQADHL RKQSMQQMSK ILTTRQAARG LLALGEYFHR LRALSSLWAA RPRERS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269\|PubMed:12897257}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU953106	0.0	EU953106.1 Zea mays clone 1383078 transcription factor TGA4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018447059.1	0.0	PREDICTED: transcription factor TGA3-like isoform X3
Swissprot	Q39234	0.0	TGA3_ARATH; Transcription factor TGA3
TrEMBL	A0A078HSC1	0.0	A0A078HSC1_BRANA; BnaA08g20970D protein
STRING	Bra016389.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3061	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22070.1	0.0	TGA1A-related gene 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7. PLoS ONE, 2013. 8(12): p. e82032 [PMID:24324742] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Fang H, et al. The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis. Plant J., 2017. 91(6): p. 1038-1050 [PMID:28670772] Sarkar S, et al. Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta. Planta, 2018. 247(1): p. 181-199 [PMID:28913593]