PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6340_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 363aa    MW: 41117.3 Da    PI: 8.5893
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6340_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.56.5e-222772651
                HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +s r ++++kR+ +++KKA+ELS+LC++ev+vi+++s g+l+++++
  RrC6340_p3 27 SSFRATSLAKRQVTVFKKAQELSILCGIEVCVIYYGSGGELKTWPK 72
                67799***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-51373IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-1726105IPR002100Transcription factor, MADS-box
PfamPF003192.9E-133070IPR002100Transcription factor, MADS-box
CDDcd002663.07E-163094No hitNo description
PROSITE profilePS5006612.3063074IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSSSSSLSCL PSSSSSRIRQ TLVQKTSSFR ATSLAKRQVT VFKKAQELSI LCGIEVCVIY  60
YGSGGELKTW PKDREKVKDM ARRYIQLSDV KRRKGQDDLD QFLKKIDKDD SKNDKKKKKL  120
KLGSSCKYPD WDPRFDNCSV EQLTELIQSL ECTQTKLQHR LRGVVESQRQ RNVHYTNMAP  180
TTTSGMNHLQ QQSNQVDMDM YNHGIGTLPQ LPSTSAFSQA QSLAPLPNSL AIHQNPNMGS  240
YSRLLGVEES GLDELMGMNM LPYNSINTNC ANYFPNLFQQ NCYNMEDYSG VLGAQETCIN  300
NMNGEDYSGL LWTQGTGINM DMFGYNNNNN PNGFPQQFVQ YPTQRVPPGF QYMDRSTQSV  360
RPF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114121KKKKKLKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487580.10.0PREDICTED: agamous-like MADS-box protein AGL103
SwissprotQ9LSB21e-95AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLA0A3P5Z8I50.0A0A3P5Z8I5_BRACM; Uncharacterized protein
STRINGBra022341.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-90AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]