PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6425_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 189aa MW: 21023.6 Da PI: 10.5788

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6425_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	66.7	6.7e-21	5	86	55	128
NAM 55 ekewyfFskrdkkyatgkrknratk.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +fF++ +k+y+tg+rk+r+++ + +W++tgk+++vl+ +g+ +g kk+Lv+y g+++k+ekt+Wvmh+y+l RrC6425_p1 5 GTVRHFFHRPSKAYTTGTRKRRKVHtdsevggETRWHKTGKTRPVLT-GGRMKGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 86 4566****************7443455555778********.99********6658999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	24.584	1	105	IPR003441	NAC domain
SuperFamily	SSF101941	8.5E-24	4	105	IPR003441	NAC domain
Pfam	PF02365	1.0E-7	9	86	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
VSKDGTVRHF FHRPSKAYTT GTRKRRKVHT DSEVGGETRW HKTGKTRPVL TGGRMKGYKK 60 ILVLYTNYGK QKKPEKTNWV MHQYHLGTNE EEKEGELVVS KIFYQTQPRQ CGGSLAAAAT 120 TKERPYLHGH HLGGGGSRHL YHNNGNVKGN GGGGSTGASE YYNNIPAIIS FNQSGIQNHL 180 VHGTQPFIP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189263	0.0	AC189263.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021P17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009137790.1	1e-121	PREDICTED: NAC domain-containing protein 73-like
Swissprot	O49459	2e-99	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	M4E5Z3	1e-120	M4E5Z3_BRARP; Uncharacterized protein
STRING	Bra024197.1-P	1e-120	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2012	28	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-101	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]