PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6425_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 348aa    MW: 39793.5 Da    PI: 5.8713
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6425_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.53.2e-50101521129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                 lppGfrFhP+deelv++yL++k+++k+           +          + e+d++ +ePw+Lp  +k + kewyfFs rd+kyatg r+nrat sgyW
  RrC6425_p2  10 LPPGFRFHPSDEELVCHYLCNKIRAKSdpgdvedD---DvdealkgasDLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYATGYRTNRATVSGYW 105
                 79***********************9977665541...1556666664699*************87788999*************************** PP

         NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                 katgkd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  RrC6425_p2 106 KATGKDRTVMDPrTSQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152
                 ***********967888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-578170IPR003441NAC domain
PROSITE profilePS5100553.87710170IPR003441NAC domain
PfamPF023657.8E-2711151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRAKSDPGD VEDDDVDEAL KGASDLVEID  60
LHICEPWQLP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT VSGYWKATGK DRTVMDPRTS  120
QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNMPPKE DWVLCRVFNK GRDWSLQDSN  180
YNNDQTQRLE VNDAPDLNYA PNYNNQLQPL LSSPPSTTID PPHHHDQWEQ LMKQPSRIID  240
HPCHHHCQHQ STCGWEQMMI GSMSSSSSHG PDHESLLNLL FADKNNSVNI AADHHDQNSE  300
KILLPSDIAS LDHDKTCMGS SFDIGMVSDL HMECAGLSFE TENLLAFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-461017515173Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382740.0KF738274.1 Brassica napus NAC transcription factor 74-2 (NAC74-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478963.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A0A7DNN50.0A0A0A7DNN5_BRANA; NAC transcription factor 74-2
TrEMBLA0A397L7880.0A0A397L788_BRACM; Uncharacterized protein
STRINGBra024194.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.10.0NAC domain containing protein 74