PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC643_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 315aa    MW: 35537 Da    PI: 6.6973
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC643_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57382.46.8e-2696185497
     DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 rl+s++DeivlLqGlid + ++  +p  d   +ye +k s sf+v+  q+ eKi +LK+K++ k+k    ++  s+ ++h+qk+f+lsk iWg
  RrC643_p3  96 TRLFSDKDEIVLLQGLIDSQGNN--NPLVDRRPLYESLKASFSFDVTWVQFREKIWSLKRKYTAKEKS--GEQASSILNPHQQKCFQLSKAIWG 185
                59****************95444..69***************************************99..888899*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.3E-2397185IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MANNLKHPLE DPPSSSTGEK EIDESEEEEE TIISSEEDEE ETPPRSGSKK DDFGSSESQL  60
TGRKRLSTNV VSSNVAKKVY THQGGKMGTN RVPPGTRLFS DKDEIVLLQG LIDSQGNNNP  120
LVDRRPLYES LKASFSFDVT WVQFREKIWS LKRKYTAKEK SGEQASSILN PHQQKCFQLS  180
KAIWGAVESA DGKSNESEKG FTKKRDLVTP RKGMNNAQEG DMKKKKKSRL VVEKESGDWD  240
DESAFFLGMD FLKAKWTKVP PTESKKETQE KMKKLHANEL ECQKFEEMLK AMKDKCAHAK  300
VELLNEVTSL IIAAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480867.11e-179PREDICTED: probable transcription factor At1g66420
TrEMBLA0A3N6PQW61e-124A0A3N6PQW6_BRACR; Uncharacterized protein
STRINGBra028108.1-P1e-122(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13542721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.12e-35DNA-binding storekeeper protein-related transcriptional regulator