PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6449_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 206aa MW: 23286.4 Da PI: 5.1175

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6449_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.1	7.8e-28	113	171	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk++++ r+YY+C+ +gC+vkk+ver+ ed +v++tYeg Hnhe RrC6449_p1 113 MDDGYKWRKYGKKSVKNNTNKRNYYKCSNEGCTVKKRVERDGEDAAYVITTYEGVHNHE 171 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.7E-31	100	173	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-26	105	173	IPR003657	WRKY domain
PROSITE profile	PS50811	29.034	108	173	IPR003657	WRKY domain
SMART	SM00774	2.7E-31	113	172	IPR003657	WRKY domain
Pfam	PF03106	4.3E-22	114	171	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MNISQNPSPN FPFFSDENFI NPFMDNFDFT DLIFDVGEGG NNNESIQEET SSPISIVSSE 60 TFTGESGGSG SGITTLSKKE STFDCKSRGS KDGETKETGN RVAFRTRSKI DVMDDGYKWR 120 KYGKKSVKNN TNKRNYYKCS NEGCTVKKRV ERDGEDAAYV ITTYEGVHNH ESPSHVYYSD 180 MVLSYDHDNW NQHSLLQAIQ QISPPY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-23	103	174	7	78	Probable WRKY transcription factor 4
2lex_A	1e-23	103	174	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013643118.1	1e-132	probable WRKY transcription factor 51 isoform X1
Swissprot	Q93WU9	1e-110	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A078F734	1e-131	A0A078F734_BRANA; BnaA06g23750D protein
TrEMBL	A0A3P5YIS8	1e-131	A0A3P5YIS8_BRACM; Uncharacterized protein
STRING	Bra024328.1-P	1e-130	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5711	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	7e-99	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]