PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC644_p8

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

CPP

Protein Properties

Length: 511aa MW: 56392.1 Da PI: 8.1029

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC644_p8	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.2	5.3e-16	229	267	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+C+CkkskClk+YCeCfaag++C e C+C dC+Nk RrC644_p8 229 SCKRCHCKKSKCLKLYCECFAAGVYCIEPCTCLDCFNKP 267 689**********************************96 PP
2	TCR	52.1	1.3e-16	315	353	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnC+ks+ClkkYCeC+++g+ Cs +C+Ce+CkN RrC644_p8 315 RHKRGCNCRKSNCLKKYCECYQSGVGCSINCRCEGCKNA 353 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	5.3E-19	228	269	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.584	229	355	IPR005172	CRC domain
Pfam	PF03638	1.1E-11	231	266	IPR005172	CRC domain
SMART	SM01114	5.0E-17	315	356	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	6.5E-12	317	353	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence Send to blast
MDLVPKGHYS TQSYPPPPLF LIWNMFSFCS HIYSSDPSKE VVLVEETLLE TVQILKNDCF 60 STPTPTPPRA INDGLTDLQR MCDGNVKRKS DTPDWETLFP DTPELLINDT LNDSEVDRCF 120 LPVSSDSKRR SCGGKKPVSN SKESSADGLH RGVRRRLLDF EMPNIKQTSK DSDVGNEYSL 180 SGNIKAGEAA GQSVVEEVPK SSLDLVVMNQ SSPKKKRLKS EQGGEGDSSC KRCHCKKSKC 240 LKLYCECFAA GVYCIEPCTC LDCFNKPIHE ETVLATRKQI ESRNPLAFAP KVIGNADSSI 300 MEVGDDASNT PASARHKRGC NCRKSNCLKK YCECYQSGVG CSINCRCEGC KNAFGRKAAS 360 SFVGLDIKQD DVSETAKTQH RAELFSSVPL PTSTPLSLRQ PLAQLPISFN NMLLPQQSQQ 420 LHGASGSSLY EGQSFRKQGM SLFSHSRIET IAEDIENVIL SPITNINAVS PNSKRVSLPH 480 LDASQMTPRR RNGERKLLLS IPTFPSLTPH R

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence Send to blast

MDLVPKGHYS TQSYPPPPLF LIWNMFSFCS HIYSSDPSKE VVLVEETLLE TVQILKNDCF  60
STPTPTPPRA INDGLTDLQR MCDGNVKRKS DTPDWETLFP DTPELLINDT LNDSEVDRCF  120
LPVSSDSKRR SCGGKKPVSN SKESSADGLH RGVRRRLLDF EMPNIKQTSK DSDVGNEYSL  180
SGNIKAGEAA GQSVVEEVPK SSLDLVVMNQ SSPKKKRLKS EQGGEGDSSC KRCHCKKSKC  240
LKLYCECFAA GVYCIEPCTC LDCFNKPIHE ETVLATRKQI ESRNPLAFAP KVIGNADSSI  300
MEVGDDASNT PASARHKRGC NCRKSNCLKK YCECYQSGVG CSINCRCEGC KNAFGRKAAS  360
SFVGLDIKQD DVSETAKTQH RAELFSSVPL PTSTPLSLRQ PLAQLPISFN NMLLPQQSQQ  420
LHGASGSSLY EGQSFRKQGM SLFSHSRIET IAEDIENVIL SPITNINAVS PNSKRVSLPH  480
LDASQMTPRR RNGERKLLLS IPTFPSLTPH R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-15	231	352	12	120	Protein lin-54 homolog
5fd3_B	2e-15	231	352	12	120	Protein lin-54 homolog
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018489622.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 3
Swissprot	Q8L548	1e-170	TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBL	A0A0D3BCT6	0.0	A0A0D3BCT6_BRAOL; Uncharacterized protein
STRING	Bo3g081380.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	1e-145	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]