PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC654_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 455aa    MW: 50776.2 Da    PI: 6.633
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC654_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.48.5e-51131411128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                lp+G+rF+Ptdeelv +yL++k++g++ ++ ++i+e+di+k+ePwdLp  + +k++++ew fF++ d+ky++g+r+nrat +gyWkatgkd++++s ++ 
  RrC654_p6  13 LPVGLRFRPTDEELVRFYLRRKINGHDDDV-KAIREIDICKWEPWDLPgfSVIKTNDSEWLFFCPLDRKYPNGSRQNRATIAGYWKATGKDRKIKSGRNI 111
                799************************999.89***************6448888999**************************************9999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 +g+k+tLvf++grapkg++t+W+mheyr+
  RrC654_p6 112 IIGVKRTLVFHSGRAPKGTRTNWIMHEYRA 141
                9***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-579164IPR003441NAC domain
PROSITE profilePS5100554.86713164IPR003441NAC domain
PfamPF023657.0E-2514140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MNQNIKVLTL DSLPVGLRFR PTDEELVRFY LRRKINGHDD DVKAIREIDI CKWEPWDLPG  60
FSVIKTNDSE WLFFCPLDRK YPNGSRQNRA TIAGYWKATG KDRKIKSGRN IIIGVKRTLV  120
FHSGRAPKGT RTNWIMHEYR ATEDDLRGTN PGQSPFVICK LFKKQELSLE DEAAEPAVSS  180
PTSSPDETKS EVSVVVKTED VKRYDIAESS FAVSGEATTA KFESQLGDID YLSFPELESL  240
NYTMFSPSHS QLQSELGFSL SAFQSGLSDF SGNYNNSSSS SQVQTQCGTN EVDTYVSEFV  300
DSILDLPDEA VPEQDGSAPH QIAYAQAQHS VGDMSNEVSR TGIIKLQARR EQPSGCATDY  360
IVHGSASKRL RLQSNLDVIK SRSLEIQTIK REVEDTDGDS MKKGKLSKNK TGFLFRKIVS  420
MRCSYGGLFR AAVVAVLFLM SVCSLTADFR ASVMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-4831657166NO APICAL MERISTEM PROTEIN
1ut4_B4e-4831657166NO APICAL MERISTEM PROTEIN
1ut7_A4e-4831657166NO APICAL MERISTEM PROTEIN
1ut7_B4e-4831657166NO APICAL MERISTEM PROTEIN
3swm_A3e-48316510169NAC domain-containing protein 19
3swm_B3e-48316510169NAC domain-containing protein 19
3swm_C3e-48316510169NAC domain-containing protein 19
3swm_D3e-48316510169NAC domain-containing protein 19
3swp_A3e-48316510169NAC domain-containing protein 19
3swp_B3e-48316510169NAC domain-containing protein 19
3swp_C3e-48316510169NAC domain-containing protein 19
3swp_D3e-48316510169NAC domain-containing protein 19
4dul_A4e-4831657166NAC domain-containing protein 19
4dul_B4e-4831657166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6413530.0KP641353.1 Brassica napus NAC transcription factor 62-1.1 (NAC62-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441133.10.0PREDICTED: NAC domain-containing protein 62-like
SwissprotQ9SCK60.0NAC62_ARATH; NAC domain-containing protein 62
TrEMBLA0A3P5YGM10.0A0A3P5YGM1_BRACM; Uncharacterized protein
TrEMBLM4DN930.0M4DN93_BRARP; Uncharacterized protein
STRINGBra017980.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.10.0NAC domain containing protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]