PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6617_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 115aa    MW: 12935 Da    PI: 10.1129
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6617_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS252.1e-0858114182244
        GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244
                 v k+ +  ++++L ++pgEa++V++++  hrl++ ++s  +    v++++++l+P +v+v  +
  RrC6617_p2  58 VGKNGDVTDPSRLGTRPGEAVVVHWMH--HRLYEVTGSYLD----VVEIIRRLKPSLVTVWSR 114
                 456778899******************..****99999999....**************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035147.3E-658114IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MITSLTATGL RKGVGTLINT GHCDEATWQR ILLSYLFLPE TRRFCGLLIP PLRVSSHVGK  60
NGDVTDPSRL GTRPGEAVVV HWMHHRLYEV TGSYLDVVEI IRRLKPSLVT VWSRN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140132.15e-23PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ11e-17SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A397ZNW71e-21A0A397ZNW7_BRACM; Uncharacterized protein
TrEMBLM4E9K09e-22M4E9K0_BRARP; Uncharacterized protein
STRINGBra025456.1-P2e-22(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2520723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.16e-20GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]