PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6669_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 214aa    MW: 24394.3 Da    PI: 8.2248
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6669_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-053961123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C + F++   L  H+++H
  RrC6669_p2 39 YSCNFCRREFRSAQALGGHMNVH 61
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.9E-63665No hitNo description
PROSITE profilePS5015711.1983966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEKPGGVWIP KKSNKESSWE ELAFAEDDAA GSLWPPRSYS CNFCRREFRS AQALGGHMNV  60
HRRDRARLKQ SEDQYLFSKS SSPPEYPSHN YSDDILPFME GSKKRKIDRD VPKNGDKTNV  120
DLENTNDLSV RMNLVIHKDC PNNAQGGDEE IGKGDMVHKR RRMRESSSQP SIFISSLSCK  180
CAIITRNEEL KHKGGHFEDL DLELRLGGDP RKTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-133461229superman protein
2l1o_A3e-133461229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893071e-105AC189307.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB033O04, complete sequence.
GenBankAC1895101e-105AC189510.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB089D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437707.11e-73PREDICTED: uncharacterized protein LOC108810073
SwissprotO809421e-56ZFP10_ARATH; Zinc finger protein 10
TrEMBLA0A397Z7H45e-69A0A397Z7H4_BRACM; Uncharacterized protein
TrEMBLM4CLS85e-69M4CLS8_BRARP; Uncharacterized protein
STRINGBra005165.1-P8e-70(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.16e-59zinc-finger protein 10