PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6704_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 409aa    MW: 46176.7 Da    PI: 7.586
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6704_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.89.3e-3285138255
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+
  RrC6704_p2  85 PRLRWTPELHLCFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 138
                 8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-3081139IPR009057Homeodomain-like
PROSITE profilePS5129413.32181141IPR017930Myb domain
SuperFamilySSF466893.94E-1682140IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-2485140IPR006447Myb domain, plants
PfamPF002499.9E-1086137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MTPSSQSSEN SKTCPSNNFK ATTTKEDDKD EEEEEEEDEE ERSADQSPSN NSYVEESGSH  60
HHHHNNDQIK KSGGSVRPYN RSKTPRLRWT PELHLCFLQA VERLGGPDRA TPKLVLQLMN  120
VKGLSIAHVK SHLQMYRSKK TDDLNQGDQG FSFEHGAGYP YNLSQLPMLQ SFDQGPSTSL  180
GYSGGSWIDH RRQVYRSPWR GLTTRDNTRT RQTLFSSRIG ERFHGVSNSI LDDKNKTISF  240
GTNSHDAVNA NNGIGEAVPR SHRSFLDGMK TFNKSWGQSF SSKPNSSMPS RPQNHIAMTL  300
NSHQRDNPRV GEETENDLKR KRLLLSDDYN KSNQDLDLSL SLKVPPTHNN LGECLLEEGE  360
KEHEDSKRLS LSLSSSTLSQ HGRAIRKEDQ NDHKKRKISV LASPLDLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-1786140458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-1786140458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-1786140357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1786140357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1786140357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1786140357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-1786140458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-1786140458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-1786140458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-1786140458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-1786140458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-1786140458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325720.0AC232572.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS005G02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482517.10.0PREDICTED: putative two-component response regulator-like APRR6 isoform X2
TrEMBLA0A397ZP060.0A0A397ZP06_BRACM; Uncharacterized protein
STRINGBo4g188940.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93592136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.11e-178G2-like family protein