PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6705_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 248aa    MW: 28071.5 Da    PI: 9.529
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6705_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.51.9e-51141381128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrFhPtdeelvv+yLk+kv +++l++ ++i+++d+++++PwdLp +    eke yfFs+r+ ky++g+r+nrat sgyWkatg dk+++++ +++
  RrC6705_p1  14 LPPGFRFHPTDEELVVQYLKRKVLSSPLPA-SIIPDFDVCRADPWDLPGN---LEKERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKRIVTSrGNQ 108
                 79****************************.89***************44...4789**********************************99885677 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  vglkktLvfykg+ p+g++tdW+mheyrl
  RrC6705_p1 109 IVGLKKTLVFYKGKPPHGSRTDWIMHEYRL 138
                 7***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6010160IPR003441NAC domain
PROSITE profilePS5100558.82814160IPR003441NAC domain
PfamPF023652.1E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDNVKFVKNG VMRLPPGFRF HPTDEELVVQ YLKRKVLSSP LPASIIPDFD VCRADPWDLP  60
GNLEKERYFF STREAKYPNG NRSNRATGSG YWKATGIDKR IVTSRGNQIV GLKKTLVFYK  120
GKPPHGSRTD WIMHEYRLSS SPPSSLGPTE NWVLCRIFLK KRASNNDDDG DNRNLGYGNG  180
HIEITTANQT EDKTKPIFFD FMRKERTTDL NLLPGSPTSD HASSGLTTEI FSSDEESSSS  240
CNSFRRNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-511216615171NO APICAL MERISTEM PROTEIN
1ut4_B5e-511216615171NO APICAL MERISTEM PROTEIN
1ut7_A5e-511216615171NO APICAL MERISTEM PROTEIN
1ut7_B5e-511216615171NO APICAL MERISTEM PROTEIN
3swm_A5e-511216618174NAC domain-containing protein 19
3swm_B5e-511216618174NAC domain-containing protein 19
3swm_C5e-511216618174NAC domain-containing protein 19
3swm_D5e-511216618174NAC domain-containing protein 19
3swp_A5e-511216618174NAC domain-containing protein 19
3swp_B5e-511216618174NAC domain-containing protein 19
3swp_C5e-511216618174NAC domain-containing protein 19
3swp_D5e-511216618174NAC domain-containing protein 19
4dul_A5e-511216615171NAC domain-containing protein 19
4dul_B5e-511216615171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9578370.0JF957837.1 Brassica napus NAC5 mRNA, complete cds.
GenBankKC9667590.0KC966759.1 Brassica napus NAC transcription factor 83 (NAC83.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457821.10.0PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY931e-143NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0D3AIS91e-168A0A0D3AIS9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D9R51e-168A0A3P6D9R5_BRAOL; Uncharacterized protein
STRINGBo2g011120.11e-169(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-131NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]