PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6713_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB

Protein Properties

Length: 215aa MW: 24599.2 Da PI: 6.3136

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6713_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23	1.9e-07	5	47	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT Ed+ + +a +++ g +W++Ia ++ +++ ++++++ RrC6713_p3 5 QWTRSEDKMFEQALVLFPEGspnRWERIADQLQ--KSAGEVREHY 47 7*****************************9..8******9 PP
2	Myb_DNA-binding	41.5	3.1e-13	97	141	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++ E++l++ + k++G+g+W++I+r + +Rt+ q+ s+ qky RrC6713_p3 97 PWSENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 141 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	8.861	1	55	IPR017930	Myb domain
SMART	SM00717	5.0E-8	2	53	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.68E-12	4	59	IPR009057	Homeodomain-like
Pfam	PF00249	5.5E-6	5	48	IPR001005	SANT/Myb domain
CDD	cd00167	1.08E-5	6	51	No hit	No description
PROSITE profile	PS51294	17.97	90	146	IPR017930	Myb domain
SuperFamily	SSF46689	7.9E-16	91	147	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.2E-16	93	145	IPR006447	Myb domain, plants
SMART	SM00717	1.5E-8	94	144	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.3E-10	96	140	IPR009057	Homeodomain-like
CDD	cd00167	2.14E-7	97	142	No hit	No description
Pfam	PF00249	3.7E-11	97	141	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MASSQWTRSE DKMFEQALVL FPEGSPNRWE RIADQLQKSA GEVREHYEAL VHDVLEIDSG 60 RVDVPDYMDD SAAGWDSAGQ ISFGSKHGET ERKRGTPWSE NEHKLFLIGL KRYGKGDWRS 120 ISRNVVVTRT PTQVASHAQK YFLRQNSVKK ERKRSSIHDI TTVDTNLAMP GSNMDWSGQQ 180 ESSVQTQHQQ QQSMSEFGQE LMTPGGHYEE FGYRM

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00055	PBM	Transfer from AT5G04760	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018472565.1	1e-161	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	4e-56	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A397ZYQ0	1e-148	A0A397ZYQ0_BRACM; Uncharacterized protein
STRING	Bo3g002960.1	1e-147	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5127	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	1e-118	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]