PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6770_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 234aa MW: 26455.8 Da PI: 5.4153

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6770_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.1	4.6e-42	5	135	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + GfrF Pt++elvv+yL++++egk+ ++++vi+ +di++veP++Lp+ ++++++++w+fF++ ++++a+g r++r+t sgyWkatg+ +v+sk RrC6770_p4 5 TTGFRFYPTEDELVVFYLRNQLEGKSgDSMHRVIPVLDIFEVEPSHLPNiageRCRGDTEQWFFFVPIQEREARGGRPSRTTGSGYWKATGSPGPVFSK 103 68*********************96667778***********656666666888*********************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 +++ +g+kkt+vfy+g+ap+g kt+W m+ey+ RrC6770_p4 104 DNRMIGVKKTMVFYTGKAPTGGKTKWKMNEYK 135 *****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-45	3	161	IPR003441	NAC domain
PROSITE profile	PS51005	45.595	4	161	IPR003441	NAC domain
Pfam	PF02365	2.7E-22	6	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MEDLTTGFRF YPTEDELVVF YLRNQLEGKS GDSMHRVIPV LDIFEVEPSH LPNIAGERCR 60 GDTEQWFFFV PIQEREARGG RPSRTTGSGY WKATGSPGPV FSKDNRMIGV KKTMVFYTGK 120 APTGGKTKWK MNEYKALDDR DNISTIPKLR HEFSLCRVYI TSGSSRAFDR RPVGVPQTGR 180 MLTNDVAVAE TSFFVGSSPE ISMSGGEHVD LSVDTEMVDG LTEPIWEWEQ LNWP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	3e-32	4	166	20	173	NAC domain-containing protein 19
3swm_B	3e-32	4	166	20	173	NAC domain-containing protein 19
3swm_C	3e-32	4	166	20	173	NAC domain-containing protein 19
3swm_D	3e-32	4	166	20	173	NAC domain-containing protein 19
3swp_A	3e-32	4	166	20	173	NAC domain-containing protein 19
3swp_B	3e-32	4	166	20	173	NAC domain-containing protein 19
3swp_C	3e-32	4	166	20	173	NAC domain-containing protein 19
3swp_D	3e-32	4	166	20	173	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018474504.1	1e-171	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-143	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A078JT76	1e-164	A0A078JT76_BRANA; BnaCnng60710D protein
TrEMBL	A0A0D3B2A7	1e-164	A0A0D3B2A7_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6ACP5	1e-164	A0A3P6ACP5_BRAOL; Uncharacterized protein
STRING	Bo3g016870.1	1e-164	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-134	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]