PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6792_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 276aa    MW: 31157.5 Da    PI: 6.5402
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6792_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12106152354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h e+Er RR+++N+ f  Lr ++P+       K++Ka+ Le +v+YI++L
  RrC6792_p1 106 MNHVEAERLRREKLNKQFYALRAVVPNV-----SKMDKASLLEDTVKYIREL 152
                 5899***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.085103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16105172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.30E-11106153No hitNo description
Gene3DG3DSA:4.10.280.108.8E-15107173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10107152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MNLLNSDDAL FMNDAFLNAS DLWPLTPADI SQRALAPEAI NSSSDSWPLV PPAYFGQIQY  60
EESNILASSV KLEDSFQFHI DAKTTPENKP PKKRGRRPTH GKEGPMNHVE AERLRREKLN  120
KQFYALRAVV PNVSKMDKAS LLEDTVKYIR ELKLNAENAE SEKNAIEIQL NELNEKMAGR  180
RKGSSSVCSG GEKESEIEVK MDVKVMDRDA MIRLESSKNN HPCARLMSAF MDLELEVNYA  240
SISVINDLMI QQATVKMGSR IYKQEQLRNL LLSKIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-26101180281Transcription factor MYC2
5gnj_B1e-26101180281Transcription factor MYC2
5gnj_E1e-26101180281Transcription factor MYC2
5gnj_F1e-26101180281Transcription factor MYC2
5gnj_G1e-26101180281Transcription factor MYC2
5gnj_I1e-26101180281Transcription factor MYC2
5gnj_M1e-26101180281Transcription factor MYC2
5gnj_N1e-26101180281Transcription factor MYC2
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479447.10.0PREDICTED: transcription factor bHLH28-like
SwissprotQ9LUK71e-74BH028_ARATH; Transcription factor bHLH28
TrEMBLM4E8861e-155M4E886_BRARP; Uncharacterized protein
STRINGBra024992.1-P1e-156(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2031456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.14e-77NACL-inducible gene 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Song S, et al.
    MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses.
    Plant Cell Physiol., 2017. 58(10): p. 1752-1763
    [PMID:29017003]
  5. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]