PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC679_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YC

Protein Properties

Length: 129aa MW: 14577 Da PI: 10.6968

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC679_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	53.7	4.8e-17	8	89	17	97
NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 + e+P++r+kki+kad+d+++i +ea l++ + elf+ l+ +s + a e+kr+t++ + +av+r + + dfl+d p RrC679_p1 8 IRPEFPITRVKKIMKADKDINKINSEALHLVTYSAELFLRFLAEKSSVVAAEKKRKTVNLDHLRTAVKRHQpTRDFLLDSLP 89 5678*************************************************************9976489***987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.79E-18	8	97	IPR009072	Histone-fold
Pfam	PF00808	2.0E-20	11	74	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	7.4E-21	12	89	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MAEEEETIRP EFPITRVKKI MKADKDINKI NSEALHLVTY SAELFLRFLA EKSSVVAAEK 60 KRKTVNLDHL RTAVKRHQPT RDFLLDSLPL PSAQPVRVGK TVSEKKPPPV GTRRIDAFFS 120 KGKAKVDSP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC797140	1e-176	KC797140.1 Brassica napus transcription factor subunit NF-YC13 (NF-YC13) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018480660.1	1e-85	PREDICTED: nuclear transcription factor Y subunit C-5
TrEMBL	A0A078H1V6	4e-81	A0A078H1V6_BRANA; BnaC07g16980D protein
STRING	Bo7g065250.1	5e-79	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12860	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	2e-70	nuclear factor Y, subunit C13