PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC67_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 427aa MW: 46893 Da PI: 9.8151

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC67_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.4	8.4e-15	349	400	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke.leelkke 55 +r++r++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+ + +e ++k+ RrC67_p2 349 RRQKRMIKNRESAARSRARKQAYTLELEAEVAQLKEQNEELQRKqVEIMEKQ 400 69*************************************9975404434444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.4E-14	345	410	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.921	347	392	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.2E-14	349	404	No hit	No description
CDD	cd14707	1.65E-25	349	403	No hit	No description
Pfam	PF00170	1.1E-12	349	405	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.5E-10	349	400	No hit	No description
PROSITE pattern	PS00036	0	352	367	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MGSRYNFVDE AKQPALGAGV PLMRQNSVFS LTFDEFQNSW GGGIGKDFGS MNMDELLKNI 60 WTAEESHSMM ANNSFNNTVV MNNNGGFSVG VGGELGGGGG GGLQRQGSLT LPRTISQRRV 120 DDVWKELMKE DDTGDGVGNV GGGASGGVPQ RQQTLGEMTL EEFLVRAGVV REESQPVERV 180 DNFNGGFFGF GSDAGLVSAR NGFGGSNQPH GGVVRPDLLT TQTQPLQMQQ QPQKVHQPRE 240 LIPKQDVAFP KQTTIAFSNT VDLVNRSQPP TQEVKPSILG VRDRPMNNNN LLQAVDFKTG 300 VTVAAVSPGS QMSPDLTPKS AMDASLSPVP YMFGRVRKTG AVLEKVIERR QKRMIKNRES 360 AARSRARKQA YTLELEAEVA QLKEQNEELQ RKQVEIMEKQ KKQLLEPMRQ AWGCKRQCLR 420 RTLTGPW

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MGSRYNFVDE AKQPALGAGV PLMRQNSVFS LTFDEFQNSW GGGIGKDFGS MNMDELLKNI  60
WTAEESHSMM ANNSFNNTVV MNNNGGFSVG VGGELGGGGG GGLQRQGSLT LPRTISQRRV  120
DDVWKELMKE DDTGDGVGNV GGGASGGVPQ RQQTLGEMTL EEFLVRAGVV REESQPVERV  180
DNFNGGFFGF GSDAGLVSAR NGFGGSNQPH GGVVRPDLLT TQTQPLQMQQ QPQKVHQPRE  240
LIPKQDVAFP KQTTIAFSNT VDLVNRSQPP TQEVKPSILG VRDRPMNNNN LLQAVDFKTG  300
VTVAAVSPGS QMSPDLTPKS AMDASLSPVP YMFGRVRKTG AVLEKVIERR QKRMIKNRES  360
AARSRARKQA YTLELEAEVA QLKEQNEELQ RKQVEIMEKQ KKQLLEPMRQ AWGCKRQCLR  420
RTLTGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00038	PBM	Transfer from AT4G34000	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:16284313}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353408	0.0	AK353408.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-J01.
GenBank	JQ971973	0.0	JQ971973.1 Eutrema salsugineum abscisic acid responsive elements-binding factor 3 (ABF3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018450922.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 6
Swissprot	Q9M7Q3	0.0	AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6
TrEMBL	E4MY11	0.0	E4MY11_EUTHA; mRNA, clone: RTFL01-30-J01
TrEMBL	V4MBG2	0.0	V4MBG2_EUTSA; Uncharacterized protein
STRING	XP_006412286.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34000.2	1e-180	abscisic acid responsive elements-binding factor 3

Publications ? help Back to Top
Zhao Q, et al. Regulation and function of Arabidopsis AtGALK2 gene in abscisic acid response signaling. Mol. Biol. Rep., 2018. [PMID:24078097] Bao Y, et al. The tumor necrosis factor receptor-associated factor (TRAF)-like family protein SEVEN IN ABSENTIA 2 (SINA2) promotes drought tolerance in an ABA-dependent manner in Arabidopsis. New Phytol., 2014. 202(1): p. 174-87 [PMID:24350984] González-Grandío E,Cubas P Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav, 2014. 9(2): p. e27994 [PMID:24518068] Xie M, et al. AtWNK9 is regulated by ABA and dehydration and is involved in drought tolerance in Arabidopsis. Plant Physiol. Biochem., 2014. 77: p. 73-83 [PMID:24561249] Kim EY,Seo YS,Park KY,Kim SJ,Kim WT Overexpression of CaDSR6 increases tolerance to drought and salt stresses in transgenic Arabidopsis plants. Gene, 2014. 552(1): p. 146-54 [PMID:25234727] Zhang H, et al. The RING finger ubiquitin E3 ligase SDIR1 targets SDIR1-INTERACTING PROTEIN1 for degradation to modulate the salt stress response and ABA signaling in Arabidopsis. Plant Cell, 2015. 27(1): p. 214-27 [PMID:25616872] Baek D, et al. A Role for Arabidopsis miR399f in Salt, Drought, and ABA Signaling. Mol. Cells, 2016. 39(2): p. 111-8 [PMID:26674968] Bao Y, et al. Overexpression of the NDR1/HIN1-Like Gene NHL6 Modifies Seed Germination in Response to Abscisic Acid and Abiotic Stresses in Arabidopsis. PLoS ONE, 2016. 11(2): p. e0148572 [PMID:26849212] Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Li X, et al. Dual Function of NAC072 in ABF3-Mediated ABA-Responsive Gene Regulation in Arabidopsis. Front Plant Sci, 2016. 7: p. 1075 [PMID:27486475] Wang Z, et al. Overexpressing Arabidopsis ABF3 increases tolerance to multiple abiotic stresses and reduces leaf size in alfalfa. Plant Physiol. Biochem., 2016. 109: p. 199-208 [PMID:27721135] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Kerr TCC, et al. Ectopic expression of two AREB/ABF orthologs increases drought tolerance in cotton (Gossypium hirsutum). Plant Cell Environ., 2018. 41(5): p. 898-907 [PMID:28098349] Lyzenga WJ,Sullivan V,Liu H,Stone SL The Kinase Activity of Calcineurin B-like Interacting Protein Kinase 26 (CIPK26) Influences Its Own Stability and that of the ABA-regulated Ubiquitin Ligase, Keep on Going (KEG). Front Plant Sci, 2017. 8: p. 502 [PMID:28443108] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Kim HJ, et al. Confirmation of Drought Tolerance of Ectopically Expressed AtABF3 Gene in Soybean. Mol. Cells, 2018. 41(5): p. 413-422 [PMID:29754472]