PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC685_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

YABBY

Protein Properties

Length: 187aa MW: 21166 Da PI: 10.0667

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC685_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	243.8	3.3e-75	2	163	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee....sastsvs 97 +++ sse+vCyv+CnfC tilavsvP++slf++vtvrCGhCt+l+s+n+ ++ ++ + ++++l+++ ++++s v+++e s s ++ RrC685_p3 2 SIDPSSERVCYVHCNFCRTILAVSVPYASLFTLVTVRCGHCTNLISLNIGVSLHQSSPPP---------IHQDLQHK-QHITSSVTRKEhgssSRSFDHF 91 67899******************************************99988765554.........44444433.3333333333300003444455 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s++ls++ ++e+pr+pp irPPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl RrC685_p3 92 STTLSDHVEREAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKAGNPQISHREAFSTAAKNWAHFPHIHFGL 163 66779******99.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-71	6	163	IPR006780	YABBY protein
SuperFamily	SSF47095	1.44E-7	108	156	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.2E-4	112	155	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MSIDPSSERV CYVHCNFCRT ILAVSVPYAS LFTLVTVRCG HCTNLISLNI GVSLHQSSPP 60 PIHQDLQHKQ HITSSVTRKE HGSSSRSFDH FSTTLSDHVE REAPRMPPIR PPEKRQRVPS 120 AYNRFIKEEI QRIKAGNPQI SHREAFSTAA KNWAHFPHIH FGLKLDSNKK GKQIDQTVAG 180 QKSNGYY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353326	0.0	AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018482032.1	1e-139	PREDICTED: putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	1e-114	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A3P6EPL4	1e-129	A0A3P6EPL4_BRAOL; Uncharacterized protein
STRING	Bo5g009010.1	1e-130	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5581	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-116	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]