PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6891_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family EIL
Protein Properties Length: 298aa    MW: 34621.5 Da    PI: 4.6364
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6891_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3143.62.8e-44251401122
                 XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekv 99 
                 ++lk+rmwkd++l+++lk++k+++   k++ ++   ++++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pekgkp +g+sdsLr+WWke v
  RrC6891_p1  25 DDLKRRMWKDRNLMEKLKQKKRDN---KDV-VSL--ESHRAEASRRKKMARSQDSVLKYMMKIMEVCKAKGFVYGIVPEKGKPITGSSDSLRRWWKETV 117
                 79*******************984...455.444..4689*********************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXX CS
        EIN3 100 efdrngpaaiskyqaknlilsge 122
                 +fd+++p+a   + ++  i++++
  RrC6891_p1 118 RFDQTAPNAALLNIKDLKISEDQ 140
                 *******9876653333444433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.2E-4525148No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MVEVEELEPL SPAEEEEEEE DISYDDLKRR MWKDRNLMEK LKQKKRDNKD VVSLESHRAE  60
ASRRKKMARS QDSVLKYMMK IMEVCKAKGF VYGIVPEKGK PITGSSDSLR RWWKETVRFD  120
QTAPNAALLN IKDLKISEDQ EASGSKTTTK RKGDFMEPSK RVYTCQNSSC PKSDASFGFI  180
DKNSRTGHEI QCLNRYATQE PRQITGDMIS MLVTSTNTTS EDDYSVSSRD DDSNWMDYLW  240
FERMQHEFNS SRSFDEDDDT AIVLNQSPES NQSDNVCQST FSVWDMGCED KDIYMFDY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14365KKRDNKDVVSLESHRAEASRRKK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553421e-142AC155342.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH052O08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022553100.11e-135putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX162e-67EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLM4CPB21e-135M4CPB2_BRARP; Uncharacterized protein
STRINGBra006050.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16143412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.19e-60EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]