PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC691_p5

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 285aa MW: 32574.2 Da PI: 7.7889

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC691_p5	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.7	9.5e-53	17	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPt+eel+ +yLkkkv+ ++++l +vi+evd++k+ePw+L++ ++ ++ + ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ +++ RrC691_p5 17 VPPGFRFHPTEEELLYYYLKKKVSYEPIDL-DVIREVDLNKLEPWELKEkcRIGSGPRnEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSIHLNSS 115 69**************************.9***********952444444335************************************* PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++gl+ktLvfy+grap+g+kt+W+mheyrl RrC691_p5 116 KKIGLRKTLVFYTGRAPHGHKTEWIMHEYRL 146 ***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-54	9	151	IPR003441	NAC domain
PROSITE profile	PS51005	51.735	17	179	IPR003441	NAC domain
Pfam	PF02365	2.3E-27	18	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MEIGSSSTVV GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW 60 ELKEKCRIGS GPRNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKSI HLNSSKKIGL 120 RKTLVFYTGR APHGHKTEWI MHEYRLDDNE NEIQVHMPLH EFANTLSHGS MHLPQLFSPD 180 SAQPFVSSIN TTDIECSQNL LRLTSNNNYG GDWSFLDKLL TTNNMNQQQQ QQHQVQNNHT 240 KCFGDSSNND QAVTHDNGGS SSSPDNQRFP FHYLGNNANL LKFPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-45	14	146	14	142	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-45	14	146	14	142	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-45	14	146	14	142	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-45	14	146	14	142	NO APICAL MERISTEM PROTEIN
3swm_A	6e-45	14	146	17	145	NAC domain-containing protein 19
3swm_B	6e-45	14	146	17	145	NAC domain-containing protein 19
3swm_C	6e-45	14	146	17	145	NAC domain-containing protein 19
3swm_D	6e-45	14	146	17	145	NAC domain-containing protein 19
3swp_A	6e-45	14	146	17	145	NAC domain-containing protein 19
3swp_B	6e-45	14	146	17	145	NAC domain-containing protein 19
3swp_C	6e-45	14	146	17	145	NAC domain-containing protein 19
3swp_D	6e-45	14	146	17	145	NAC domain-containing protein 19
4dul_A	6e-45	14	146	14	142	NAC domain-containing protein 19
4dul_B	6e-45	14	146	14	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:19081078, ECO:0000269\|PubMed:20197506}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC010793	1e-103	AC010793.3 Genomic sequence for Arabidopsis thaliana BAC F20B17 from chromosome I, complete sequence.
GenBank	CP002684	1e-103	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021686391.1	1e-117	protein SOMBRERO-like isoform X1
Swissprot	Q9MA17	1e-107	SMB_ARATH; Protein SOMBRERO
TrEMBL	A0A3N6R5D0	0.0	A0A3N6R5D0_BRACR; Uncharacterized protein
STRING	POPTR_0010s18420.1	1e-115	(Populus trichocarpa)
STRING	XP_002521498.1	1e-115	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6653	25	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	2e-87	NAC family protein

Publications ? help Back to Top
Fendrych M, et al. Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis. Curr. Biol., 2014. 24(9): p. 931-40 [PMID:24726156] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]