PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6992_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YA
Protein Properties Length: 291aa    MW: 32223.9 Da    PI: 9.7868
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6992_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.96.8e-33135190258
   CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 ep++VNaKQy++I++RRq+Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF
  RrC6992_p1 135 EPVFVNAKQYHAIMRRRQQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 190
                 9****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.8E-38132193IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.879133193IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.9E-27135190IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.2E-24136158IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860138158IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.2E-24167190IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
LKVVDARPEH TTKQISFQDQ DSSSTQSTCQ SYTDVASSGD DIPSRQISFL TKSGSEETQQ  60
KGFTTTHPKP SSMTGLPSIH FTPTHANFTF HYADPHFGGG MLAATYLPQA PTCNPQMVGM  120
VPGRVPLPVE ITETEPVFVN AKQYHAIMRR RQQRAKLEAQ NKLIKARKPY LHESRHVHAL  180
KRPRGSGGRF LNTKKLLQES QQGTAKEQEE SKKANMSRFE AHVLQHNKDR SSTTSGSDIT  240
SASDGVDIFG HTGFQFSGFQ TTQTNRAMLV NGHQSNDMHG GGDLHHFSVH I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-20135194362NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8006331e-137KC800633.1 Brassica napus transcription factor subunit NF-YA3B (NF-YA3B) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453575.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
SwissprotQ93ZH21e-163NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A3N6S5I11e-177A0A3N6S5I1_BRACR; Uncharacterized protein
STRINGBo2g079060.11e-177(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-154nuclear factor Y, subunit A3