PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC699_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 282aa    MW: 31373.1 Da    PI: 5.4362
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC699_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.2e-151472148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...........TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...........kgRtlkqcksrwqkyl 48
                     +g WT+eEd++lv+ ++++G g+W+t ++  g           ++R++k+c++rw +yl
        RrC699_p4 14 KGQWTPEEDKILVKHIEKHGCGRWNTFPKQTGkthnffdfilrLRRCGKSCRLRWKNYL 72
                     799******************************************************97 PP
2Myb_DNA-binding48.32.3e-1578120145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg++T eE++l  ++ ++lG++ W+tIa +++ gRt++++k+ w+
        RrC699_p4  78 RGPFTSEEEKLVFQLQALLGNR-WSTIATHLP-GRTDNDIKNLWN 120
                      89********************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.909972IPR017930Myb domain
SuperFamilySSF466891.51E-2711119IPR009057Homeodomain-like
SMARTSM007172.7E-91374IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-221578IPR009057Homeodomain-like
CDDcd001671.43E-91772No hitNo description
PfamPF139211.4E-131788No hitNo description
PROSITE profilePS5129423.75973127IPR017930Myb domain
SMARTSM007171.1E-1277125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2379126IPR009057Homeodomain-like
CDDcd001672.10E-980120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGRAAYRGEQ GLKKGQWTPE EDKILVKHIE KHGCGRWNTF PKQTGKTHNF FDFILRLRRC  60
GKSCRLRWKN YLNPDIKRGP FTSEEEKLVF QLQALLGNRW STIATHLPGR TDNDIKNLWN  120
SRVKKRSLLN LDPTTEASIP SLALANQAPA SPTTTGVMSQ WETTSDCDNF FDIWNSEIVE  180
SFTTTLAPWY ESTSCQIPFS RAASSSPSAL LKSSTNSCGS KEVAMASCSS PCTKDDDDDD  240
DSSDSALQLL LDSPLIGGDD DIDMTFLEEK SDGKTQSPAV GF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-281212625127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437225.11e-154PREDICTED: transcription factor MYB51-like isoform X1
SwissprotQ9M2D91e-93MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A178VGX71e-89A0A178VGX7_ARATH; MYB17
STRINGAT3G61250.16e-92(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2899922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-73myb domain protein 17