PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 130aa    MW: 14945.6 Da    PI: 4.3728
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.28.4e-151199298
             EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
       B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
             +k +++  + +   l +p    e++  +   + t+ l d  gr W+++   ++++++++lt GW +Fvk+n+L++g ++ F +d +++f  +v +f 
  RrC6_p4 11 IKPFIS--HKSAESLEIPLGLNEHFPDP--LPNTVDLLDYCGRCWTIRT--KRRGESVFLTVGWGNFVKDNELEDGKMMNFIYDCNRTF--HVIIFG 99
             555533..33334478888877555544..888****************..********************************987777..888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-195101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.218101IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-2010100IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.1E-1410101IPR003340B3 DNA binding domain
PfamPF023622.8E-121298IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MAATDEDQGF IKPFISHKSA ESLEIPLGLN EHFPDPLPNT VDLLDYCGRC WTIRTKRRGE  60
SVFLTVGWGN FVKDNELEDG KMMNFIYDCN RTFHVIIFGH DSVSEHRDFP RAVVDVSDYE  120
TGEEEEEKSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A5e-4811013102At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149100.12e-68PREDICTED: B3 domain-containing protein At1g16640
SwissprotQ9FX772e-54Y1664_ARATH; B3 domain-containing protein At1g16640
TrEMBLA0A397YYT15e-67A0A397YYT1_BRACM; Uncharacterized protein
STRINGBo5g022070.17e-67(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157511416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.17e-57B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]