PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7004_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 553aa    MW: 61684.6 Da    PI: 4.4139
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7004_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.59.7e-48171432128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                 +pGfrFhPtdeelv++yLk+k+ +k+l++ ++i  vd+yk+eP dLp +  +k++e++w++F++r++ky++  r+ r t +gyWkatgkd+ ++  +++
  RrC7004_p1  17 APGFRFHPTDEELVMYYLKRKIYRKRLTV-NAIGVVDVYKIEPDDLPgQsVLKTGERQWFYFTPRSRKYPNAARSGRGTPTGYWKATGKDRVIFY-NSR 113
                 69*************************99.89**************96447788999**************************************.999 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  vglkktLvfy+g+ap+ge+tdWvmhey++
  RrC7004_p1 114 SVGLKKTLVFYRGKAPTGERTDWVMHEYTM 143
                 ****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.07716166IPR003441NAC domain
SuperFamilySSF1019415.23E-5416166IPR003441NAC domain
PfamPF023658.2E-2518142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MADPPPNSCF KEGKFTAPGF RFHPTDEELV MYYLKRKIYR KRLTVNAIGV VDVYKIEPDD  60
LPGQSVLKTG ERQWFYFTPR SRKYPNAARS GRGTPTGYWK ATGKDRVIFY NSRSVGLKKT  120
LVFYRGKAPT GERTDWVMHE YTMNEEELDR CNNAKDYYAL YKLFKKSGSG PKNGEDYGAP  180
FQEEEWLDDD DDDDIAVPEE PLVRHEDTPC VDNGRLFEPV NVQLDDFEEI LNGFPRAPLV  240
PQSCIDGIAF SVPLVNSEEE LQSTLVNNSS GEFLSPQQTG GFLPNGEPYI RPSSSAVEPF  300
VFEKEDYIEV DDLLAPELGA SSVERPAQFL NPGEFGDFSE FDQLFHDVSM SLDMEPIAQE  360
TSVHPSSPCK FADNTSNEKQ HFLNQQFQDQ IPENKVNNND FTDDVWFQDD DDDQAVLFDQ  420
PQSITSGSFA PLPSSGVMPG TANVNAQDQE GENGGGTSPF TSALWAFMDS IPSTPASACE  480
GPINRTFVRM SSFSRIRFSG KANGTPSVTS TVVVAKKRRR NRGFLLLSIV GALCAIFWVF  540
IATVGASGRP VLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-421814317140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485609.10.0PREDICTED: NAC domain-containing protein 17-like isoform X1
RefseqXP_018485610.10.0PREDICTED: NAC domain-containing protein 17-like isoform X2
SwissprotQ9XIC50.0NAC17_ARATH; NAC domain-containing protein 17
TrEMBLA0A078GS920.0A0A078GS92_BRANA; BnaA05g18390D protein
TrEMBLA0A397ZB670.0A0A397ZB67_BRACM; Uncharacterized protein
STRINGBra034436.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.10.0NAC domain containing protein 17
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  4. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  5. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  6. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  7. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]