PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7016_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 214aa    MW: 23448.6 Da    PI: 6.6814
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7016_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-094392253
                HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                +  h  +Er+RR+++ + f+ Lr++lP       ++K   +e +  Av++Ik+
  RrC7016_p1 43 KLLHRDIERQRRQEMATLFASLRDHLPLqY---IKGKRAVSEHVSGAVNFIKD 92
                6679************************66...9999999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.85E-1238111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-83992No hitNo description
PROSITE profilePS5088811.7574193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-74392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-843112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDPYQNPNPK GYQGHMLFVS AGDGGSGGSD IPKGTVDSKQ KKKLLHRDIE RQRRQEMATL  60
FASLRDHLPL QYIKGKRAVS EHVSGAVNFI KDTETRIKEL SARRDELSRE TSNPDLAGTA  120
ELGNSVPASV LVQPCVSGFE VVVSSNSLGP QALPLSRVLE VLQELGLEVI SSLTTRVNES  180
LIHTIRVEVN SFGCLDLAWL QQKLVEELIP STGY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937003e-73AB493700.1 Arabidopsis thaliana At4g25410 mRNA for hypothetical protein, partial cds, clone: RAAt4g25410.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482233.11e-138PREDICTED: transcription factor bHLH126-like
SwissprotQ9STJ65e-97BH126_ARATH; Transcription factor bHLH126
TrEMBLA0A078IIE71e-131A0A078IIE7_BRANA; BnaA03g47380D protein
TrEMBLA0A3P5ZT971e-131A0A3P5ZT97_BRACM; Uncharacterized protein
STRINGBo7g110290.11e-127(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.14e-90bHLH family protein