PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC7017_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 412aa MW: 45744.1 Da PI: 5.6548

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC7017_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.5	1.3e-32	210	264	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fv+a++qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+ RrC7017_p1 210 KQRMRWTPELHEAFVDAINQLGGSERATPKAVLKLINSPGLTIYHVKSHLQKYRT 264 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.862	207	267	IPR017930	Myb domain
SuperFamily	SSF46689	8.6E-17	208	264	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.1E-30	209	266	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.5E-23	210	264	IPR006447	Myb domain, plants
Pfam	PF00249	5.6E-10	212	263	IPR001005	SANT/Myb domain
Pfam	PF14379	2.4E-22	304	350	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MTLNGGFGFP TAMSSFFPLL PTTLDERYNH HKFPNSLWVS SSGQELMNNP VPCQVFPLVS 60 GGGSSSGYCN SVYVSAHERS SSQTRQVSVE TQSLPVTNQT QEQKDMSWPE DQLQGFFDFP 120 VPDPQAESSS SRAKTEWPDW ANQMISVDDD GLEPNWSDLL GDPSVLNQDS KIPAPSCDIA 180 RQEVVVVSTH QHQVDSSSAK SSQASSMTSK QRMRWTPELH EAFVDAINQL GGSERATPKA 240 VLKLINSPGL TIYHVKSHLQ KYRTARYKPE LSVDTGTLIA FEKPPLKTLK TIEDIKSIDL 300 KTSIEITEAL RLQMEVQKKL HEQLEVQRTL QLQIEEQGRY LQMMIEKQQQ KMQEKKIGSS 360 SGSSSMQEAD TSSAPSPNLS QVSITERLQS GSSTLDQSGS FSGATKKRVR ED

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MTLNGGFGFP TAMSSFFPLL PTTLDERYNH HKFPNSLWVS SSGQELMNNP VPCQVFPLVS  60
GGGSSSGYCN SVYVSAHERS SSQTRQVSVE TQSLPVTNQT QEQKDMSWPE DQLQGFFDFP  120
VPDPQAESSS SRAKTEWPDW ANQMISVDDD GLEPNWSDLL GDPSVLNQDS KIPAPSCDIA  180
RQEVVVVSTH QHQVDSSSAK SSQASSMTSK QRMRWTPELH EAFVDAINQL GGSERATPKA  240
VLKLINSPGL TIYHVKSHLQ KYRTARYKPE LSVDTGTLIA FEKPPLKTLK TIEDIKSIDL  300
KTSIEITEAL RLQMEVQKKL HEQLEVQRTL QLQIEEQGRY LQMMIEKQQQ KMQEKKIGSS  360
SGSSSMQEAD TSSAPSPNLS QVSITERLQS GSSTLDQSGS FSGATKKRVR ED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-28	210	268	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-28	210	268	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-28	210	268	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-28	210	268	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-28	210	268	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-28	210	268	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-28	210	268	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-28	210	268	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118630	2e-84	AK118630.1 Arabidopsis thaliana At3g04450 mRNA for putative transfactor, complete cds, clone: RAFL19-89-P11.
GenBank	BT005352	2e-84	BT005352.1 Arabidopsis thaliana At3g04445 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018486012.1	0.0	PREDICTED: myb family transcription factor PHL13 isoform X1
Swissprot	F4J3P7	0.0	PHLD_ARATH; Myb family transcription factor PHL13
TrEMBL	M4FGG8	0.0	M4FGG8_BRARP; Uncharacterized protein
STRING	Bra040196.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04450.1	1e-159	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]