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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC701_p6 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 309aa MW: 34613 Da PI: 9.875 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC701_p6 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 358.4 | 1.5e-109 | 1 | 309 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyye....paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalp 96
mdd g+r+ g+++ + ++ ++ +q+m++iaerda+i+ernla+sekkaavaerdmaflqrd+a+aern+a++erd++l+al++++ns +p
RrC701_p6 1 MDDGGHRD--NGWHKasqgK-QQQHQPSMKQVMTIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIMERDSALAALQYRDNS----MP 93
99999965..4544432321.233334456************************************************************9998....44 PP
GAGA_bind 97 vgvqvlsgtksidslqqlse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskkkvkkesader........ 186
++ q + +i+++q++++ ql+++a+e+re+e ++ + + ake k + +++ a++++ +ka k+kk++e++ k + +
RrC701_p6 94 TSRQ---HQPHIHHHQHQHHmVQLTENAYETREMEPNDGSAKPKRGKRAKEPKATTTTKAAANKRGPKAPrKVKKENEDELTKIMFVK---Tnldyggee 187
4444...444566666655559************988877755555555555555555555555544443233333333333222222...135678999 PP
GAGA_bind 187 .....skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydl 279
sk+++ks++ +ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S++PLP+ +++++aR++grKmS++af+klL++LaaeG +dl
RrC701_p6 188 eaatgSKSDWKSQETvGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMHPLPALPNKKHARVGGRKMSGSAFSKLLSRLAAEGhHDL 287
99999********9659*******************************************************************************88** PP
GAGA_bind 280 snpvDLkdhWAkHGtnkfvtir 301
snpvDLkdhWAkHGtn+++ti+
RrC701_p6 288 SNPVDLKDHWAKHGTNRYITIK 309
*********************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MDDGGHRDNG WHKASQGKQQ QHQPSMKQVM TIIAERDAAI QERNLAISEK KAAVAERDMA 60
FLQRDTAIAE RNNAIMERDS ALAALQYRDN SMPTSRQHQP HIHHHQHQHH MVQLTENAYE 120
TREMEPNDGS AKPKRGKRAK EPKATTTTKA AANKRGPKAP RKVKKENEDE LTKIMFVKTN 180
LDYGGEEEAA TGSKSDWKSQ ETVGLNQVVY DETTMPPPVC SCTGVLRQCY KWGNGGWQSS 240
CCTTTLSMHP LPALPNKKHA RVGGRKMSGS AFSKLLSRLA AEGHHDLSNP VDLKDHWAKH 300
GTNRYITIK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189297 | 1e-146 | AC189297.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB027O09, complete sequence. |
| GenBank | EF529513 | 1e-146 | EF529513.1 Brassica rapa subsp. pekinensis GAGA-binding transcriptional activator (BBR/BPC6) gene, complete cds. |
| GenBank | EF529514 | 1e-146 | EF529514.1 Brassica rapa subsp. pekinensis GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
