PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7044_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 148aa    MW: 16641.5 Da    PI: 10.2231
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7044_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.41.6e-1254951655
         AP2 16 vAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                +AeIr+p++ +g  +kr +lg+f+ta eAa a+++a+ +++g
  RrC7044_p2 54 RAEIREPVNqRGgNSKRLWLGTFDTAAEAALAYDRAASAMYG 95
                69****888777677**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.36941103IPR001471AP2/ERF domain
SMARTSM003807.4E-1448109IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-1354105IPR016177DNA-binding domain
CDDcd000185.80E-1854104No hitNo description
Gene3DG3DSA:3.30.730.103.5E-1855104IPR001471AP2/ERF domain
PfamPF008471.4E-66295IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MEKEDNVSNQ SSSASVEPSR RRRRRRVAEP VDTTLSKWVK EEEGLKKVRR VQARAEIREP  60
VNQRGGNSKR LWLGTFDTAA EAALAYDRAA SAMYGRYARL NFPDRLGNCP GGEMNDKPGS  120
SRSYWLETSN VSETGNSLID KKDGKGYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925RRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:21069430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634722.11e-67PREDICTED: dehydration-responsive element-binding protein 2E
RefseqXP_013704026.11e-67dehydration-responsive element-binding protein 2E-like
RefseqXP_013705373.11e-67dehydration-responsive element-binding protein 2E-like
SwissprotO809172e-28DRE2E_ARATH; Dehydration-responsive element-binding protein 2E
TrEMBLA0A078JBN62e-66A0A078JBN6_BRANA; BnaC04g53380D protein
STRINGBo4g027470.15e-67(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142491823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.16e-22ERF family protein
Publications ? help Back to Top
  1. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]