PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC704_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 343aa    MW: 38405 Da    PI: 6.3134
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC704_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.71.4e-3761482127
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k................kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                p+GfrF Pt+ el+++yL+ +++g + ++++ i+ +d+++veP +Lp k                +++++ ++w fF++r++++a+g r++r+t  gyWk
  RrC704_p4   6 PVGFRFYPTEVELISFYLRFQLHGGNATIHSLIPILDVFSVEPTQLPsKgvfyvdeylfaelageRCRGDAEQWLFFVPRQEREARGGRPSRTTGLGYWK 105
                89***************************999***************5499****99999988876667888**************************** PP

        NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                atg+  +v+s +++++g+kkt+vfy g+ap+g+kt+W m+ey+
  RrC704_p4 106 ATGSPGPVFSPDNRVIGVKKTMVFYIGKAPTGRKTKWKMNEYK 148
                ******************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-403174IPR003441NAC domain
PROSITE profilePS5100543.2915174IPR003441NAC domain
PfamPF023651.6E-186148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEHEIPVGFR FYPTEVELIS FYLRFQLHGG NATIHSLIPI LDVFSVEPTQ LPSKGVFYVD  60
EYLFAELAGE RCRGDAEQWL FFVPRQEREA RGGRPSRTTG LGYWKATGSP GPVFSPDNRV  120
IGVKKTMVFY IGKAPTGRKT KWKMNEYKGI DEAASVSTIP KLRQEFSVCR IYIKSGSSRA  180
FDRRPTEAYV IERRLPRFGI ETSSRGTATQ SNSEMVDGQS QLRERKLPNN SVETSSYDTF  240
TTSQETSYSG GGDQVQLPVN DTTTIQSIPE MVDGPSQLRA RKLPYNEVKS QSCATVSTSS  300
ETSCSGGGDQ FQMPVNASAT QTISEMVDGL SQPFWEWEQL NWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-30517920173NAC domain-containing protein 19
3swm_B2e-30517920173NAC domain-containing protein 19
3swm_C2e-30517920173NAC domain-containing protein 19
3swm_D2e-30517920173NAC domain-containing protein 19
3swp_A2e-30517920173NAC domain-containing protein 19
3swp_B2e-30517920173NAC domain-containing protein 19
3swp_C2e-30517920173NAC domain-containing protein 19
3swp_D2e-30517920173NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437066.10.0PREDICTED: putative NAC domain-containing protein 61
SwissprotQ9M2901e-113NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBLA0A397YZT91e-172A0A397YZT9_BRACM; Uncharacterized protein
TrEMBLM4DSE91e-172M4DSE9_BRARP; Uncharacterized protein
STRINGBra019442.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.21e-128NAC domain containing protein 61