PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7051_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 662aa    MW: 76152.1 Da    PI: 7.4189
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7051_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.32.2e-1087128445
                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                 +k  rr+++NReAAr+sR+RKka++++Lee   +L +  ++L
  RrC7051_p2  87 DKMKRRLAQNREAARKSRLRKKAYVQQLEESRLKLAQLEQEL 128
                 7999*************************9655555444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-778163IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.5E-782131No hitNo description
PROSITE profilePS502179.34786130IPR004827Basic-leucine zipper domain
PfamPF001702.3E-787129IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.21E-688128No hitNo description
PROSITE patternPS00036091106IPR004827Basic-leucine zipper domain
PfamPF141442.8E-28173246IPR025422Transcription factor TGA like domain
SuperFamilySSF465651.44E-21455533IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.0E-21456534IPR001623DnaJ domain
SMARTSM002711.2E-16463527IPR001623DnaJ domain
PROSITE profilePS5007617.573464535IPR001623DnaJ domain
CDDcd062575.09E-14465524IPR001623DnaJ domain
PfamPF002264.4E-19465532IPR001623DnaJ domain
PRINTSPR006255.5E-15466484IPR001623DnaJ domain
PRINTSPR006255.5E-15484499IPR001623DnaJ domain
PRINTSPR006255.5E-15507527IPR001623DnaJ domain
PROSITE patternPS006360512531IPR018253DnaJ domain, conserved site
PRINTSPR006255.5E-15553572IPR001623DnaJ domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MMSSTSPTHL ASLRDMGIYE PFQQLVSWGN VFKSDINDHS PNTASSSVIQ VDHNIKANYP  60
SSSHNQIEVE PSSNDHQEDE DDGMNHDKMK RRLAQNREAA RKSRLRKKAY VQQLEESRLK  120
LAQLEQELEK AKQQGTYSSG SSYVGPSGSI NPSIAAFELE YLHWLEDQSR RVSDIRTALQ  180
ARISDIELRM LVESCLNHYA NLFRMKSDAA KADVFYLISG MWRTSTERLF QWIGGFRPSD  240
LLNVLMPYLQ PLTDQQILEV RNLQQSSQQA EDALSQGIDK LQQSLAENIV IDVVMESSDY  300
PSHMGAAIEN LQALEGFVNQ ADHLRQQTLQ QMAKILTTRQ SARGLLCLGE YLHRLRALSS  360
LWAACPREHA IRSIAEGLKC EKVMSNLRAI CRPHTVFASI VCCSRNQSRS IVKVSIQKLR  420
FRTRVSNSFP SSSRATSKDS NFWFGVSQRK TLVRAASNWS EEKSPYDTLE LERDAEEEQI  480
KVAYRRLAKY YHPDVYDGKG TLEEGETAEG RFIKIQAAYE LLMDTEKRRE YDMDNRVNPM  540
KASQAWMEWL MKKRKAFDQR GDMAIAAWAE QQQLEINLRA RRLSRSKVDP EEERKILEKE  600
KKASRELFNS TLKRHTLVLK KRDLMRKKAE EDKKKLITQL LAAEGLELDT EEEEEEEEET  660
AK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00247DAPTransfer from AT1G77920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533840.0AK353384.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-N08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443022.10.0PREDICTED: transcription factor TGA7-like
RefseqXP_018443023.10.0PREDICTED: transcription factor TGA7-like
SwissprotQ93ZE20.0TGA7_ARATH; Transcription factor TGA7
TrEMBLA0A371FDF40.0A0A371FDF4_MUCPR; Transcription factor TGA3 (Fragment)
STRINGXP_010416756.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.10.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]