PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7098_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 632aa    MW: 71825.9 Da    PI: 6.1106
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7098_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.77.9e-175236031798
                 E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 +lp + + ++  ++k + ++ +l +++g+sW+v l+++ ++g y++t+GW++F  +n+ k gD+++F ++g+ ++++++ v+ 
  RrC7098_p1 523 YLPVEAT-SCtALNK-QYQETILVSKDGNSWKVSLRFSESGGNYYITRGWRKFTVDNRCKIGDVILFNVVGDGKTTPLLCVCP 603
                 5666665.4445554.5568999*************************************************9999*999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-11401485IPR015300DNA-binding pseudobarrel domain
CDDcd100177.03E-10404484No hitNo description
SuperFamilySSF1019361.12E-10404489IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.6E-11406496IPR003340B3 DNA binding domain
PROSITE profilePS508638.007459496IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-15502596IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.449507605IPR003340B3 DNA binding domain
SMARTSM010193.8E-11511605IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-14511606IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-15523603IPR003340B3 DNA binding domain
CDDcd100172.98E-11539587No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MSKDDEKRVR SGDRPFTKTK RSNRDVLDQN ELQTYASLEK MLHKAIHVIR QLKKKGNTNN  60
SPASKQQNGN VCNNCSRCLG EITSRRVDVC GEPCNQTETV LINPEDPLEG LVEMIRIRLD  120
LGVLTPVVLT YQLPDWMLDP EGPRTLPITL ATDKDVETML SVTEYMTEKV MYVTSGPELV  180
AKYQFLCRTP FRIGERSFLG EGVTEESSRL LSNYLVGGHP IICSKTMLEI MFNEPQLLIV  240
YRVSLEIELV YAPTPEQRDE FPRFTVDDAI TILEGENPYN NGENINVQSE EVLDGELMDV  300
EQLQREFPNF RAPTPGSHGE PLDVQPLRTL GPYEPLWEDE SAEEQAYWNG VFEDERIHQF  360
NVSQAPRQTN GGLGLPIVNR VVEKSKIFLM INNGRPKSSL SYEPTFFQPL LPGFDTHLNI  420
PVAFFVNHVE GSNDHIKFAK LRTYASDNTL LVKVDGMKLT DGWKDFAVAH DLRIGDILIF  480
RHKEIWCFMS HLSDQVSVTF NIMHHHLTTS IMIVMIRQPT IRYLPVEATS CTALNKQYQE  540
TILVSKDGNS WKVSLRFSES GGNYYITRGW RKFTVDNRCK IGDVILFNVV GDGKTTPLLC  600
VCPERKADSE ILGKHKHLRR KSGDIASGSR IN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.18e-35B3 family protein