PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC710_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 189aa    MW: 21807 Da    PI: 6.3978
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC710_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.56.1e-1372127560
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                +++rr+ +NRe+ArrsR RK+  ++eL   v+ L +eN++  ++l++ ++  + + 
  RrC710_p4  72 RKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENQQILEKLNQASDSNDLVL 127
                689***************************************99999888776555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-1168132IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.4570118IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-971123No hitNo description
PfamPF001704.5E-1172129IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.06E-1272121No hitNo description
CDDcd147021.02E-1773120No hitNo description
PROSITE patternPS0003607590IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MQPNYDSSSL NNMQQQDYFH LNHYYNNLNP SNNILNLIPY PQIQELNLQS PASNHSTTSD  60
EATEDIFVIN ERKQRRMVSN RESARRSRMR KQRHLDELLS QVAWLRSENQ QILEKLNQAS  120
DSNDLVLQEN LSLKEENLAL HQVITSMKKV IGAGGSRSIN GRYSSSSLDN DLDQDLSSIT  180
DDRRTHHPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18491RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00512DAPTransfer from AT5G15830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2401010.0AC240101.1 Sisymbrium irio clone SIR-39M12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444402.11e-121PREDICTED: basic leucine zipper 43
SwissprotQ9FMC29e-29BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A0D3AJ971e-107A0A0D3AJ97_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DK541e-107A0A3P6DK54_BRAOL; Uncharacterized protein
STRINGBo2g012800.11e-107(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106321532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15830.16e-77basic leucine-zipper 3
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]