PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC7148_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 394aa MW: 42819.7 Da PI: 10.2662

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC7148_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.1	4e-13	315	365	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ + e+ ++ RrC7148_p2 315 RRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKANQELRRKQAEMVEM 365 69***************************************9765555443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-10	311	377	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.806	313	362	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.80E-23	315	367	No hit	No description
SuperFamily	SSF57959	7.74E-10	315	364	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-12	315	364	No hit	No description
Pfam	PF00170	1.1E-10	315	372	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	318	333	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1900057	Biological Process	positive regulation of leaf senescence
GO:1903648	Biological Process	positive regulation of chlorophyll catabolic process
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MGTHINFNNL GGGGGEGFNQ MKATDTTAIN PLARQSSLYS LTFDELQTTL LGGPGKDLGS 60 MNMDELLKSI WTAEESQAMA MNMTSSAQAT ALTQQPGGGG GGNLQRQGSL TLPRTISQKT 120 VDEVWKFLIT KDEGGSSGGG GGESNAPQRQ QTLGEMTLEE FLFRAGVVRE DNNNSSQQMG 180 QVGNNNNSNG FYGNNGAPGG LGFEFGQQNH NSISFNNGAN DSMILNQPPG LGLKVGGTMQ 240 QQQQLNQPHP QQQQQRVPQT IFPKQANFAF AAPGVTAAAT SPGTSSAENN SLSPVPYVLN 300 RGRRSNTGLE KVIERRQRRM IKNRESAARS RARKQAYTLE LEAEIEKLKK ANQELRRKQA 360 EMVEMQKNEQ LKESSKKPWG SKRQCLRRTL TGPW

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MGTHINFNNL GGGGGEGFNQ MKATDTTAIN PLARQSSLYS LTFDELQTTL LGGPGKDLGS  60
MNMDELLKSI WTAEESQAMA MNMTSSAQAT ALTQQPGGGG GGNLQRQGSL TLPRTISQKT  120
VDEVWKFLIT KDEGGSSGGG GGESNAPQRQ QTLGEMTLEE FLFRAGVVRE DNNNSSQQMG  180
QVGNNNNSNG FYGNNGAPGG LGFEFGQQNH NSISFNNGAN DSMILNQPPG LGLKVGGTMQ  240
QQQQLNQPHP QQQQQRVPQT IFPKQANFAF AAPGVTAAAT SPGTSSAENN SLSPVPYVLN  300
RGRRSNTGLE KVIERRQRRM IKNRESAARS RARKQAYTLE LEAEIEKLKK ANQELRRKQA  360
EMVEMQKNEQ LKESSKKPWG SKRQCLRRTL TGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ971974	1e-138	JQ971974.1 Eutrema salsugineum abscisic acid responsive elements-binding factor 4 (ABF4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018460668.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1
Refseq	XP_018460669.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1
Swissprot	Q9M7Q2	1e-174	AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBL	D7L9X6	0.0	D7L9X6_ARALL; Uncharacterized protein
STRING	fgenesh2_kg.3__2145__AT3G19290.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	1e-109	abscisic acid responsive element-binding factor 1

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance. Plant Mol. Biol., 2018. 98(1-2): p. 137-152 [PMID:30143991]