PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7167_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BBR-BPC
Protein Properties Length: 218aa    MW: 24182.9 Da    PI: 10.3937
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7167_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind243.51.4e-7441218117301
   GAGA_bind 117 pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslDestlPvPvCs 214
                 pq e+s v +  + +l  +p++e+++++++k++k      +  +++k ++kk+  +++k  +k+ s+ ++ k+ekk+ d+ v++  s+D s++P+PvCs
  RrC7167_p1  41 PQAEPSEVVVLPQFHLFPPPTRESRNDMEQKSTKL-----SPSLKPKPQSKKR--SAPKTPKKTLSV-PEIKREKKNPDInVVDISSFDVSGVPPPVCS 131
                 44444444444444445555444444333333222.....3333444444444..333333333333.6899********889999************* PP

   GAGA_bind 215 CtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                 CtG++++CYkWG+GGWqS+CCt++iS++PLP+st+r+g+R+agrKmS+ga+ klL +La+eGydl +pvDL++hWA+HGtnkfvti+
  RrC7167_p1 132 CTGVPKVCYKWGMGGWQSSCCTISISTFPLPMSTTRPGTRLAGRKMSNGAYVKLLMRLAGEGYDLTCPVDLRNHWARHGTNKFVTIK 218
                 **************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.7E-761218IPR010409GAGA-binding transcriptional activator
PfamPF062173.2E-6640218IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MQQPATTSTT KETSLPTSNP HWFHSYFPVP RTTGFDLSQV PQAEPSEVVV LPQFHLFPPP  60
TRESRNDMEQ KSTKLSPSLK PKPQSKKRSA PKTPKKTLSV PEIKREKKNP DINVVDISSF  120
DVSGVPPPVC SCTGVPKVCY KWGMGGWQSS CCTISISTFP LPMSTTRPGT RLAGRKMSNG  180
AYVKLLMRLA GEGYDLTCPV DLRNHWARHG TNKFVTIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629841.11e-137PREDICTED: protein BASIC PENTACYSTEINE7
SwissprotO822861e-110BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A3P6A6321e-136A0A3P6A632_BRACM; Uncharacterized protein
STRINGBo3g028310.11e-136(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136742127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.41e-98basic pentacysteine 7