PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7180_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ZF-HD
Protein Properties Length: 251aa    MW: 27191.4 Da    PI: 8.2277
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7180_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.12.1e-332684259
  ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59
                 ++v YkeClkNhAa+lGgha+DGCgEfmp+++++ +++++l+CaACgCHRnFHRr++++
   RrC7180_p2 26 MGVCYKECLKNHAANLGGHALDGCGEFMPTPTATpTDPSSLRCAACGCHRNFHRRDPSD 84
                 5789*****************************99********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.4E-272881IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-192881IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.0493081IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-303081IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.0E-26143211IPR009057Homeodomain-like
SuperFamilySSF466894.23E-17143211IPR009057Homeodomain-like
TIGRFAMsTIGR015654.2E-27153210IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDLSSKHKQT SPNSPVAGQL TIAEEMGVCY KECLKNHAAN LGGHALDGCG EFMPTPTATP  60
TDPSSLRCAA CGCHRNFHRR DPSDHLSFLP SSPSGTESPP SQSLHRVASP VPCSYYTSAP  120
HHMLLSLSSG FPGPSDQDPT GVRSEHSSKG GMRKRTRTKF TPEQKTKMRA FAEKAGWKIN  180
GCDEKSVREF CSENGIERGV LKVWMHNNKY SLLSGKNREI LSMDHPRLCL NTQSCNNGGE  240
EGDNVGGSSS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-191542111875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893530.0AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456778.11e-165PREDICTED: zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ11e-132ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A0D3CZB81e-162A0A0D3CZB8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6H7691e-162A0A3P6H769_BRAOL; Uncharacterized protein
STRINGBo6g109180.11e-162(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51662549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-116zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]