PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7187_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 229aa    MW: 26148.3 Da    PI: 10.2652
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7187_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.85.6e-202752195
                HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3 21 kfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                +f++++g++++ + +++l++e+grsW+++l+ r+++gr  ++t+GW++F++a+gLk+gD ++Fkl++r  +  +v 
  RrC7187_p3  2 SFVRANGLETRYGGDIVLMNEKGRSWTLTLKQRQCGGRrSYITRGWRDFCSAHGLKAGDLFTFKLIKRGAT--LVL 75
                79999*99999999****************88777766799************************996444..443 PP
2B357.42.6e-18131225199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f++ ++++++ +++ l lpk+f++ hg+    +++++l d++g +W  kl  r  s+r+ +++GWk+F k n +k+g+++ +kl++++++++v+k+++k
  RrC7187_p3 131 FVTLTLKPYNVTKCVLFLPKPFTDLHGIT--VGTKMSLLDKQGVKWCTKL--RSESKRIRMAGGWKDFFKVNCVKTGESIKLKLIWEEDKSCVLKFYSK 225
                 67788899***************999876..4569***************..***********************************999999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010196.8E-14181IPR003340B3 DNA binding domain
PROSITE profilePS5086316.44180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-17278IPR015300DNA-binding pseudobarrel domain
PfamPF023623.2E-18276IPR003340B3 DNA binding domain
CDDcd100171.78E-17277No hitNo description
SuperFamilySSF1019361.96E-16278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.0E-17124222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-18129218IPR015300DNA-binding pseudobarrel domain
CDDcd100177.32E-14130222No hitNo description
PfamPF023622.7E-16131225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.731131226IPR003340B3 DNA binding domain
SMARTSM010195.7E-22131226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSFVRANGLE TRYGGDIVLM NEKGRSWTLT LKQRQCGGRR SYITRGWRDF CSAHGLKAGD  60
LFTFKLIKRG ATLVLLLKSP SHRAEEADGE IESLSKESDS DDEESNQDER SLIKRRISIW  120
KASPSPSMNR FVTLTLKPYN VTKCVLFLPK PFTDLHGITV GTKMSLLDKQ GVKWCTKLRS  180
ESKRIRMAGG WKDFFKVNCV KTGESIKLKL IWEEDKSCVL KFYSKVEQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894331e-117AC189433.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475755.11e-131PREDICTED: B3 domain-containing protein REM14-like
SwissprotQ8GYM41e-68REM14_ARATH; B3 domain-containing protein REM14
TrEMBLA0A398A3081e-128A0A398A308_BRACM; Uncharacterized protein
STRINGBo3g025330.11e-120(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.13e-64B3 family protein