PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7261_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 209aa    MW: 24125.2 Da    PI: 9.6845
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7261_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.2e-152774148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +l +++  +G g W+++a+  g++Rt+k+c++rw++yl
       RrC7261_p2 27 KGPWTMEEDWILFNYILNHGEGLWNSVAKASGLKRTGKSCRLRWLNYL 74
                     79********************************************97 PP
2Myb_DNA-binding55.21.6e-1780123146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++++lG++ W++Ia++++ gRt++++k++w++
       RrC7261_p2  80 RGNITEEEQLLIIRLHAKLGNR-WSKIAKYLP-GRTDNEIKNFWRT 123
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.92274IPR017930Myb domain
SuperFamilySSF466893.74E-2925121IPR009057Homeodomain-like
SMARTSM007171.9E-102676IPR001005SANT/Myb domain
PfamPF002491.1E-132774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-212881IPR009057Homeodomain-like
CDDcd001672.84E-72974No hitNo description
PROSITE profilePS5129424.84975129IPR017930Myb domain
SMARTSM007173.8E-1679127IPR001005SANT/Myb domain
PfamPF002492.6E-1680123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2482128IPR009057Homeodomain-like
CDDcd001673.26E-1284123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDTKKTEIRK ERIPSQREEE EEGTVRKGPW TMEEDWILFN YILNHGEGLW NSVAKASGLK  60
RTGKSCRLRW LNYLRPDVRR GNITEEEQLL IIRLHAKLGN RWSKIAKYLP GRTDNEIKNF  120
WRTKIQRHVK LSSSVNTTNI RHCSGNSQSS VITATDQGSS GKGFDMAESL ISPAKTTTSF  180
HVMEQSNDSY WNVEDQWPLQ LLNGDHPVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-272712927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB24 to control stamen filament elongation in the late developed flowers. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:19325888}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00324DAPTransfer from AT3G01530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180911e-163AK118091.1 Arabidopsis thaliana At3g01530 mRNA for putative transcription factor, complete cds, clone: RAFL19-34-G03.
GenBankBT0055741e-163BT005574.1 Arabidopsis thaliana clone U50886 putative myb family transcription factor (At3g01530) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490235.11e-144PREDICTED: transcription factor MYB57-like
SwissprotQ9SSA11e-108MYB57_ARATH; Transcription factor MYB57
TrEMBLA0A078IJ111e-138A0A078IJ11_BRANA; BnaC05g48910D protein
STRINGBo5g155050.11e-136(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01530.11e-108myb domain protein 57