PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC728_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 413aa    MW: 46446.5 Da    PI: 5.8307
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC728_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1048.8e-33231285155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l+k +gLt++hvkSHLQkYR+
  RrC728_p5 231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLKNPGLTIYHVKSHLQKYRT 285
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.832228288IPR017930Myb domain
SuperFamilySSF466896.63E-17229285IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-30229287IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-23231285IPR006447Myb domain, plants
PfamPF002491.7E-10233284IPR001005SANT/Myb domain
PfamPF143793.5E-21319365IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MTMANDFGYS TAMSSSFSAL HATVEDRYHK FPNSFWGSSG QELMHNPVVP CHVINSGGVY  60
LSGFCNVSTH GRTSQTQPPV STMPSDRSSM QDCQQSCLLI DHHPQEFLDP LDELFDFSDH  120
VSAPNPQAES SGGVKVVDLH EKSEWQKWAD QLMSVDNGSE PNWSELLGEP SPHNQNSQAQ  180
FHQRSQQIPT PSPDVQRQEI IANQQQQQHQ VVALEEQLSA RNSSASAATS KQRMRWTPEL  240
HEAFVEAVNQ LGGSERATPK AVLKLLKNPG LTIYHVKSHL QKYRTARYKP ETSEATGEPQ  300
EKKITSIEDI KSLDMKTSVE ITQALRLQME VQKRLHEQLE IQRSLQLQIE KQGRYLQMMF  360
EKQQQLQDNN GSSSELSAKQ CNGTSAEVEF GLETQTENQT ESALASRKRA RDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-28231289260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-28231289260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-28231289260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-28231289260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-28231289260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-28231289260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-28231289260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-28231289260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527940.0AK352794.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-05-N05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461278.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
SwissprotQ8GUN50.0PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLM4F4W90.0M4F4W9_BRARP; Uncharacterized protein
STRINGBra036123.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.20.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]