PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7309_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 180aa    MW: 19656.2 Da    PI: 10.2835
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7309_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.2e-18107156255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdps+    +r+++g+f taeeAa  +++a+ +++g
  RrC7309_p3 107 KYRGVRQRP-WGKYAAEIRDPSK---GARIWIGTFNTAEEAAIGYDKAAIRIKG 156
                 8********.**********965...4***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-19107163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-27107162IPR001471AP2/ERF domain
PfamPF008472.6E-11107156IPR001471AP2/ERF domain
CDDcd000188.33E-28107162No hitNo description
PROSITE profilePS5103220.85107164IPR001471AP2/ERF domain
SMARTSM003801.4E-32107170IPR001471AP2/ERF domain
PRINTSPR003672.9E-10108119IPR001471AP2/ERF domain
PRINTSPR003672.9E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MKSRERNVKY TVHRKLTSLT DQPFNGCPKV VKITVTDPCA TDSSSDEEEN DRAVSRGAAT  60
RKRVKRYVDV IRFCDNKQGA AAAKRKKPAT TENGGGGDDH GSAKPVKYRG VRQRPWGKYA  120
AEIRDPSKGA RIWIGTFNTA EEAAIGYDKA AIRIKGCNAL TNILTPPPPS TPPTAIDLET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-24103163162ATERF1
3gcc_A3e-24103163162ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438034.11e-106PREDICTED: ethylene-responsive transcription factor CRF5-like
RefseqXP_018438223.11e-106PREDICTED: ethylene-responsive transcription factor CRF5-like
SwissprotO823394e-63CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLA0A078HU655e-78A0A078HU65_BRANA; BnaC04g01080D protein
TrEMBLA0A0D3BNV15e-78A0A0D3BNV1_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QW704e-78A0A3N6QW70_BRACR; Uncharacterized protein
TrEMBLA0A3P6C3E45e-78A0A3P6C3E4_BRAOL; Uncharacterized protein
STRINGBo4g009400.18e-79(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.18e-60cytokinin response factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]