PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC7317_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WOX

Protein Properties

Length: 250aa MW: 27823.7 Da PI: 6.1737

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC7317_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.7e-19	93	153	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql+ Le+lF + +ps++++++++++l ++ e +V++WFqNrRa+ k+ RrC7317_p1 93 RQRWTPTPLQLQNLERLFDQgIGTPSKQKIKDITDELsqhgQIAEHNVYNWFQNRRARSKR 153 89***************99************************************97 PP
2	Wus_type_Homeobox	97.2	1.3e-31	93	155	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++ Le+l+++G+ tP+k++i++it eL+++G+i ++NV++WFQNr+aR+++kq RrC7317_p1 93 RQRWTPTPLQLQNLERLFDQGIGTPSKQKIKDITDELSQHGQIAEHNVYNWFQNRRARSKRKQ 155 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.977	89	154	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.4E-14	90	156	IPR009057	Homeodomain-like
SMART	SM00389	2.1E-11	91	158	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.82E-15	91	155	IPR009057	Homeodomain-like
Pfam	PF00046	4.2E-17	93	153	IPR001356	Homeobox domain
CDD	cd00086	6.65E-10	93	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MMEWDNQQQP NNHHSSNLQG MDVNGGSGSG GMYMRVMTDE QLETLRKQIA IYSTICERLV 60 QMHKTLTSQQ DLAGGRIGGL YADTTIAHKM TGRQRWTPTP LQLQNLERLF DQGIGTPSKQ 120 KIKDITDELS QHGQIAEHNV YNWFQNRRAR SKRKQHGGVG SSSHKNGEGE VETETETLNE 180 KRKRPESLVG LPDGNDNNNG IGTTATTTSP RPEDLCFQSP EMSSDLHFLG VLSNPSISGC 240 DHVEDYDISG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	154	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189541	1e-167	AC189541.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004A18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018449389.1	0.0	PREDICTED: WUSCHEL-related homeobox 13-like
Swissprot	O81788	1e-126	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A3P6FCY4	1e-129	A0A3P6FCY4_BRAOL; Uncharacterized protein
STRING	Cagra.2350s0096.1.p	1e-129	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4620	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-103	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]