PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7361_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TALE
Protein Properties Length: 103aa    MW: 12489.3 Da    PI: 11.113
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7361_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.83.6e-0853862154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54
                k +yp++e++ +L +++gL+ +q+ +WF N+R +
  RrC7361_p2 53 KWPYPTEEDKVRLVQETGLQLKQINNWFINQRKR 86
                569*****************************87 PP
2ELK31.53.8e-11728122
         ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                ELKh+L+++Y+++++++++E++
  RrC7361_p2  7 ELKHELKQGYKEKIVDIREEIL 28
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512139.969727IPR005539ELK domain
PfamPF037891.4E-7728IPR005539ELK domain
SMARTSM011886.1E-4728IPR005539ELK domain
PROSITE profilePS5007111.6452790IPR001356Homeobox domain
SuperFamilySSF466892.18E-172993IPR009057Homeodomain-like
SMARTSM003893.3E-112994IPR001356Homeobox domain
CDDcd000861.33E-83091No hitNo description
Gene3DG3DSA:1.10.10.602.8E-263491IPR009057Homeodomain-like
PfamPF059202.0E-184786IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MERVRQELKH ELKQGYKEKI VDIREEILRK RRAGKLPGDT TSVLKAWWQS HSKWPYPTEE  60
DKVRLVQETG LQLKQINNWF INQRKRNWHS NPSSSTIPKN KRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-143095873Homeobox protein PKNOX1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533381e-141AK353338.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452419.11e-68PREDICTED: homeobox protein knotted-1-like 4 isoform X1
SwissprotP480001e-66KNAT3_ARATH; Homeobox protein knotted-1-like 3
SwissprotP480017e-67KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A0D3AII64e-67A0A0D3AII6_BRAOL; Uncharacterized protein
TrEMBLA0A398AD574e-67A0A398AD57_BRACM; Uncharacterized protein
TrEMBLA0A3P6D2G74e-67A0A3P6D2G7_BRAOL; Uncharacterized protein
STRINGBo2g010190.17e-68(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.13e-69KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]