PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7421_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 508aa    MW: 57882.9 Da    PI: 9.8466
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7421_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.21.5e-13241021297
                 HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3  12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ++ l++p  f+ +h  g ++   kt +l++  s ++W vk+  ++ +    lt+GWkeF+ a++L++gD+ +F+++g++ f  +v++f
  RrC7421_p2  24 HTH-LRIPVAFFLKHvqG-SNDHIKTSKLRTeASAKTWLVKI--DGLK----LTDGWKEFAVAHELRVGDITIFRHEGEMVF--HVTAF 102
                 455.99*********963.4445568888884556*******..6666....***********************9998888..77776 PP
2B377.51.4e-24131224599
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +++++l+ +rl +p++fa+++g++k ++k+++l +e+grsW+++l+y++++ +++ + GW++F+++ng+k g   +F+l+g +++ +v++++r+
  RrC7421_p2 131 NVSPSSLRFDRLHIPNSFARSNGLNKMSGKEIVLLNEEGRSWNFNLKYNRTGMSTYVRPGWRRFCSENGMKKGHHYTFELVG-KSAPPVLRLCRA 224
                 56778888899*********************************************************************99.8999*****997 PP
3B357.52.4e-18246335798
                 .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 +s++l ++ l+l ++f++++g++k  s ++t+++e+g sW++ l++  + ++++l+ GWk F++ ng+k+gD++++kl++ s+ ++v+ ++ 
  RrC7421_p2 246 SSNSLINDKLYLQRHFITANGLEKGFS-EITVKNEWGGSWNLPLRHYESHNHTYLGPGWKTFCQVNGMKAGDSFMLKLVE-SGNKPVLLLCT 335
                 677888999**************9887.****************99999999*************************997.78888888875 PP
4B347.14.2e-15410498290
                 EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                 +  ++++++lk++ l lp +f++++g++k+  ++++l  ++g ++  v l  +++ gr+ l+kGW+eF +a+g+k+g++++++l+++  e+
  RrC7421_p2 410 LRLTLTHNALKTSVLHLPMSFTRANGINKP--RKIMLLGKDGvKKQVVDLLKTRSTGRMRLGKGWREFRDAHGVKVGESFLLELIWDeVEA 498
                 5566788999999*************9965..58********7777778888999999***************************994444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-199104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-169104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.03912105IPR003340B3 DNA binding domain
CDDcd100177.16E-1213102No hitNo description
SMARTSM010196.9E-1915105IPR003340B3 DNA binding domain
PfamPF023621.8E-82598IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-23121223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-20122223IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.213127225IPR003340B3 DNA binding domain
SMARTSM010193.6E-29128225IPR003340B3 DNA binding domain
CDDcd100173.33E-18128223No hitNo description
PfamPF023623.0E-23130224IPR003340B3 DNA binding domain
PROSITE profilePS5086313.676240336IPR003340B3 DNA binding domain
SMARTSM010192.7E-19241337IPR003340B3 DNA binding domain
PfamPF023625.4E-17245335IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-15245336IPR015300DNA-binding pseudobarrel domain
CDDcd100173.37E-13246334No hitNo description
SuperFamilySSF1019361.77E-15252337IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-16405496IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-15405503IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-12407495No hitNo description
PfamPF023624.3E-14409503IPR003340B3 DNA binding domain
SMARTSM010195.2E-21409507IPR003340B3 DNA binding domain
PROSITE profilePS5086312.055409507IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MADDQSLHSP TNPHFFQPLL PGFHTHLRIP VAFFLKHVQG SNDHIKTSKL RTEASAKTWL  60
VKIDGLKLTD GWKEFAVAHE LRVGDITIFR HEGEMVFHVT AFGPREKRKR VKKNPRTKEE  120
PSSDQSQFVA NVSPSSLRFD RLHIPNSFAR SNGLNKMSGK EIVLLNEEGR SWNFNLKYNR  180
TGMSTYVRPG WRRFCSENGM KKGHHYTFEL VGKSAPPVLR LCRAEHDPKP APESSVHHSY  240
YVGSVSSNSL INDKLYLQRH FITANGLEKG FSEITVKNEW GGSWNLPLRH YESHNHTYLG  300
PGWKTFCQVN GMKAGDSFML KLVESGNKPV LLLCTSNRGK TPLEIPEDSD HVNSLCSDTS  360
SGDDSREESQ ESEEERLEDD SRSKECFEME KRKSSLRCIC SSPYSKHRFL RLTLTHNALK  420
TSVLHLPMSF TRANGINKPR KIMLLGKDGV KKQVVDLLKT RSTGRMRLGK GWREFRDAHG  480
VKVGESFLLE LIWDEVEAIP VLKFSTEV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473922.10.0PREDICTED: B3 domain-containing protein REM17-like
SwissprotQ84WP31e-135REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A0D3CDE60.0A0A0D3CDE6_BRAOL; Uncharacterized protein
STRINGBo5g044960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-128B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]