PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC7520_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 316aa MW: 35648.4 Da PI: 4.9238

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC7520_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.1	7.2e-36	6	141	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 +GfrF+Ptdee+v +y ++k +++ +++ev+++vdiy+++Pw+Lp k ++k++++ wyfF +++++ + +++++r t+sg+W++tg ++e+++k RrC7520_p1 6 VGFRFRPTDEEIVGHYVRPKNLESNtSHVDEVMNTVDIYSFDPWELPcKsTIKSTDEVWYFFGCKKNERHMQNKQSRRTTSGFWSKTGVTTEITRKrgg 104 7***************99665553788889**********96347888999*9999999999999999999**********9998 PP NAM 96 .kgelvglkktLvfykgra....pkgektdWvmheyr 127 ++e++g k+++vf ++++ p+ +k+dWvmhey RrC7520_p1 105 gDREKIGEKRVFVFRSNSKilggPSKSKSDWVMHEYM 141 88889******643322227779*******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.717	4	167	IPR003441	NAC domain
SuperFamily	SSF101941	1.31E-36	5	167	IPR003441	NAC domain
Pfam	PF02365	3.0E-21	6	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MVDPVVGFRF RPTDEEIVGH YVRPKNLESN TSHVDEVMNT VDIYSFDPWE LPCKSTIKST 60 DEVWYFFGCK KNERHMQNKQ SRRTTSGFWS KTGVTTEITR KRGGGDREKI GEKRVFVFRS 120 NSKILGGPSK SKSDWVMHEY MATFSRPDSP PNQTVMTTYT VCKVMFKGDP KDLPSSSSSA 180 GEIEHDLSLI PHVNNSSGEQ STETELENPL QITSTISLLP HVNNNSGGLS TETEVNPRHF 240 TGFLGLEEEV QFEDEMCRVI NNLPTDDWNS LFNNDVGQGN TMFMQEDRND YRPKKSLTGS 300 DGDSDSDSIT TTVSIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-17	7	167	20	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-17	7	167	20	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-17	7	167	20	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-17	7	167	20	165	NO APICAL MERISTEM PROTEIN
4dul_A	3e-17	7	167	20	165	NAC domain-containing protein 19
4dul_B	3e-17	7	167	20	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018470744.1	0.0	PREDICTED: NAC domain-containing protein 5-like
Swissprot	O81914	6e-81	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	M4EWW8	1e-134	M4EWW8_BRARP; Uncharacterized protein
STRING	Bra033303.1-P	1e-134	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	1e-79	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]