PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7541_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 260aa    MW: 29954.9 Da    PI: 6.4605
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7541_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.86e-20113172259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg+ WrKYGqK++k++++ +sYY+C+++   +C++kk+v+  +++p +  +tY g+H+++
  RrC7541_p2 113 HDGFLWRKYGQKQIKEANH-QSYYKCAYTkdqNCEAKKQVQMIQHNPPLYSTTYFGHHTCQ 172
                 6**************9865.8******988899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-20105172IPR003657WRKY domain
PROSITE profilePS5081116.122107174IPR003657WRKY domain
SuperFamilySSF1182901.44E-19109173IPR003657WRKY domain
SMARTSM007745.7E-30112173IPR003657WRKY domain
PfamPF031061.1E-19114172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MKSSQENAVE TLLHGHGCAN QLKLIMDQAK LDSSMEREDL AKSVLHCFSD ALSILIDTND  60
HHHQDDRSNN SSPQDSSPVL ENSRKPLHKR GRKTSVAESS DYRRHESPNP IYHDGFLWRK  120
YGQKQIKEAN HQSYYKCAYT KDQNCEAKKQ VQMIQHNPPL YSTTYFGHHT CQLHQAYASF  180
PIDTSDPLDS HMIRFDHPDS SIHQHQNQSQ DQIVYLKDEN MTLPDKAEEW SSPSQWMSSE  240
VAHAVEAFEF NPFRTSSDLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-121141721069OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458934.10.0PREDICTED: probable WRKY transcription factor 62
SwissprotQ9LZV61e-139WRK62_ARATH; Probable WRKY transcription factor 62
TrEMBLA0A398A4V11e-166A0A398A4V1_BRACM; Uncharacterized protein
STRINGBra023211.1-P1e-150(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145051522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.11e-141WRKY DNA-binding protein 62