PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7562_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 289aa    MW: 31960.8 Da    PI: 9.3637
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7562_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.25.5e-16218260547
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                 ++++r++kNRe+A rsR+RK+a+++eLe kv  LeaeN++L+ 
  RrC7562_p2 218 RKQKRMIKNRESAARSRARKQAYTQELEIKVSRLEAENERLRR 260
                 689**************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.1E-14211261No hitNo description
SMARTSM003387.6E-13214287IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.369216261IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.38E-10218263No hitNo description
PfamPF001701.9E-12218261IPR004827Basic-leucine zipper domain
CDDcd147071.35E-20218272No hitNo description
PROSITE patternPS000360221236IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDSEREPKSQ SLNRQGSLYS LTLDEVQTHL AGSGKALGSM NLDELLKSVC SVEANQQQQE  60
EDLSLSRQGS LTLPRDLSKK TVEEVWKDIQ HNNTNGAQER RDNNNSNNNN NKQPTLGEMT  120
LEDLLLKAGV VTETVTGGGG GGGLGENNIP QAAGPWVQYH QLPSMMPQGQ SFMPYPPVGD  180
MQGAMVSQSS LLMGGDTQTT PGRKRVASGE VVEKTVERKQ KRMIKNRESA ARSRARKQAY  240
TQELEIKVSR LEAENERLRR QKEVEKILPS APPPDPKRQQ LRRTSSAPF
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458583.11e-174PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
SwissprotQ9LES31e-138AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A3P6C8Y71e-145A0A3P6C8Y7_BRACM; Uncharacterized protein
STRINGBra007276.1-P1e-142(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18842883
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.11e-132ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  2. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]